#author("2024-04-09T09:53:52+00:00","mss","mss")
#author("2024-04-09T09:57:20+00:00","mss","mss")
* Publication List[#o17c40ab]

** Publication List of RY [#s9e9cb2f]

- [[Publons (Web of Science ResearcherID:C-2128-2008):https://www.webofscience.com/wos/author/record/1754809]]

- [[Google Scholar:http://scholar.google.com/citations?user=ZVwSewgAAAAJ]]

- [[Scopus ID: 16416164200:http://www.scopus.com/authid/detail.url?authorId=16416164200]]

- [[ORCID: 0000-0002-8371-2833:http://orcid.org/0000-0002-8371-2833]]

- [[researchmap:https://researchmap.jp/ryo0921]]

*** Refereed Papers [#wee45932]

''Future''

//:''000''| Mitsusuke Tarama, Kenji Mori, and Ryoichi Yamamoto,&br;
//Mechano-chemical subcellular-element model of crawling cells,&br;
//https://arxiv.org/abs/1905.03001
//[http://dx.doi.org/]

//:''000''| Norihiro Oyama, John J. Molina, and Ryoichi Yamamoto,&br;
//Hydrodynamic alignment of microswimmers in pipes,&br;
//https://arxiv.org/abs/1612.00135
//[http://dx.doi.org/]


''2023''

:''130''| T. Kobayashi, G. Jung, Y. Matsuoka, Y. Nakayama, J. J. Molina, and R. Yamamoto,&br;
Direct numerical simulations of a microswimmer in a viscoelastic fluid,&br;
''Soft Matter'' 19, 7109–7121 (2023).
[http://dx.doi.org/10.1039/D3SM00600J]

:''129''| S. K. Schnyder, J. J. Molina, R. Yamamoto, and M. S. Turner,&br;
Rational social distancing policy during epidemics with limited healthcare capacity,&br;
''PLOS Comput. Biol.'' 19, e1011533 (2023).
[http://dx.doi.org/10.1371/journal.pcbi.1011533]

:''128''| S. K. Schnyder, J. J. Molina, R. Yamamoto, and M. S. Turner,&br;
Rational social distancing in epidemics with uncertain vaccination timing,&br;
''PLoS One'' 18, e0288963 (2023).
[http://dx.doi.org/10.1371/journal.pone.0288963]

:''127''| K. Sankaewtong, J. J. Molina, M. S. Turner, and R. Yamamoto,&br;
Learning to swim efficiently in a nonuniform flow field,&br;
''Phys. Rev. E'' 107, 065102 (2023).
[http://dx.doi.org/10.1103/PhysRevE.107.065102]

:''126''| C. Feng, J. J. Molina, and R. Yamamoto,&br;
Dynamics of a Model Microswimmer in the Vicinity of a Liquid Droplet,&br;
''J. Phys. Soc. Japan'' 92, 074802 (2023).
[http://dx.doi.org/10.7566/JPSJ.92.074802]

:''125''| C. Feng, J. J. Molina, M. S. Turner, and R. Yamamoto,&br;
Dynamics of microswimmers near a liquid–liquid interface with viscosity difference,&br;
''Phys. Fluids'' 35, 051903 (2023).
[http://dx.doi.org/10.1063/5.0148008]

:''124''| S. Imamura, K. Sawaki, J. J. Molina, M. S. Turner, and R. Yamamoto,&br;
Collective Motion of Quincke Rollers with Fully Resolved Hydrodynamics,&br;
''Adv. Theory Simulations'' 6, 2200683 (2023).
[http://dx.doi.org/10.1002/adts.202200683]

:''123''| M. Uzair, M. D. Qasim, M. A. Bhatti, A. A. Zaidi, J. J. Molina, R. Yamamoto, A. Hamid,&br;
Direct numerical simulations of isolated rigid particles; Validation of smooth profile method,&br;
''Powder Technol.'' 418, 118280 (2023).
[http://dx.doi.org/10.1016/j.powtec.2023.118280]

''2022''

:''122''| J. Li, S. K. Schnyder, M. S. Turner, and R. Yamamoto,&br;
Competition between cell types under cell cycle regulation with apoptosis,&br;
''Phys. Rev. Res.'' 4, 033156 (2022).
[http://dx.doi.org/10.1103/PhysRevResearch.4.033156]

:''121''| K. Kanayama, T. Hoshino, and R. Yamamoto,&br;
Relation between dynamic heterogeneities observed in scattering experiments and four-body correlations,&br;
''Phys. Rev. Res.'' 4, L022006 (2022).
[http://dx.doi.org/10.1103/PhysRevResearch.4.L022006]

:''120''| M. Tarama, K. Mori, and R. Yamamoto,&br;
Mechanochemical subcellular-element model of crawling cells,&br;
''Front. Cell Dev. Biol.'' 10, 118280 (2022).
[http://dx.doi.org/10.3389/fcell.2022.1046053]

:''119''| C. Feng, J. J. Molina, M. S. Turner, and R. Yamamoto,&br;
Dynamics of microswimmers near a soft penetrable interface,&br;
''Phys. Rev. Res.'' 4, 043202 (2022).
[http://dx.doi.org/10.1103/PhysRevResearch.4.043202]

''2021''

:''118''| J. Li, S. K. Schnyder, M. S. Turner, and R. Yamamoto,&br;
Role of the Cell Cycle in Collective Cell Dynamics,&br;
''Phys. Rev. X'' 11, 031025 (2021).
[http://dx.doi.org/10.1103/PhysRevX.11.031025]

:''117''| R. Yamamoto, J. J. Molina, and Y. Nakayama,&br;
Smoothed profile method for direct numerical simulations of hydrodynamically interacting particles,&br;
''Soft Matter'' 16, 4226–4253 (2021).
[http://dx.doi.org/10.1039/D0SM02210A]

''2020''

:''116''| Federico Fadda, John Jairo Molina, and Ryoichi Yamamoto,&br;
Dynamics of a chiral swimmer sedimenting on a flat plate,&br;
''Phys. Rev. E'' 101, 052608 (2020).
[http://dx.doi.org/10.1103/PhysRevE.101.052608]

:''115''| Simon K. Schnyder, John J. Molina, and Ryoichi Yamamoto,&br;
Control of cell colony growth by contact inhibition,&br;
''Scientific Report'' 10, 6713-6726 (2020).
[http://dx.doi.org/10.1038/s41598-020-62913-z]

:''114''| Gregory Lecrivain, Taisa B. Pacheco, Ryoichi Yamamoto, Uwe Hampel, and Takashi Taniguchi,&br;
Eulerian/Lagrangian formulation for the elasto-capillary deformation of a flexible fibre,&br;
''J. Comput. Phys.'' 409, 109324-109339 (2020).
[http://dx.doi.org/10.1016/j.jcp.2020.109324]

:''113''| N. Arai, S. Watanabe, M. T. Miyahara, R. Yamamoto, U. Hampel, and G. Lecrivain,&br;
Direct observation of the attachment behavior of hydrophobic colloidal particles onto a bubble surface,&br;
''Soft Matter'' 16, 695–702 (2020).
[http://dx.doi.org/10.1039/C9SM01787A]

:''112''| A. Hamid, A.B. Arshad, S. Mehdi, M.D. Qasim, A. Ullah, J.J. Molina, R. Yamamoto,&br;
A numerical study of sedimentation of rod like particles using smooth profile method,&br;
''Int. J. Multiph. Flow'' 127, 103263-103273 (2020).
[http://dx.doi.org/10.1016/j.ijmultiphaseflow.2020.103263]

''2019''

:''111''| Matteo Campoa, Simon K. Schnyderc, John J. Molinad, Thomas Speck and Ryoichi Yamamoto,&br;
Spontaneous Spatiotemporal Ordering of Shape Oscillations Enhances Cell Migration,&br;
''Soft Matter'' 15, 4939-4946 (2019).
[http://dx.doi.org/10.1039/C9SM00526A]

:''110''| John J. Molina, Ryoichi Yamamoto,&br;
Mechanosensitivity of Crawling Cells under Periodically Stretching Substrates,&br;
''Soft Matter'' 15, 683 (2019).
[http://dx.doi.org/10.1039/C8SM01903G]

''2018''

:''109''| Gregory Lecrivain, Yuki Kotani, Ryoichi Yamamoto, Uwe Hampel, and Takashi Taniguchi,&br;
A diffuse interface model to simulate the rise of a fluid droplet across a cloud of particles,&br;
''Physical Review Fluids'' 3, 094002 (2018).
[http://dx.doi.org/10.1103/PhysRevFluids.3.094002]

:''108''| Chunyu Shih, John J. Molina, and Ryoichi Yamamoto,&br;
Field-induced dipolar attraction between like-charged colloids,&br;
''Soft Matter'' 12, 914-924 (2018).
[http://dx.doi.org/10.1039/C8SM00395E]

:''107''| M. Shakeel, A. Hamid, A. Ullah, J. J. Molina, and R. Yamamoto,&br;
Direct Numerical Simulations of Correlated Settling particles,&br;
''J. Phys. Soc. Japan'' 87, 064402 (2018).
[http://dx.doi.org/10.7566/JPSJ.87.064402]

:''106''|Mitsusuke Tarama and Ryoichi Yamamoto,&br;
Mechanics of cell crawling by means of force-free cyclic motion,&br;
''J. Phys. Soc. Japan'' 87, 044803 (2018).
[http://dx.doi.org/10.7566/JPSJ.87.044803]

:''105''| Norihiro Oyama, Kosuke Teshigawara, John J. Molina, Ryoichi Yamamoto, and Takashi Taniguchi,&br;
Reynolds-number-dependent dynamical transitions on hydrodynamic synchronization modes of externally driven colloids,&br;
''Phys. Rev. E'' 97, 032611 (2018).
[http://dx.doi.org/10.1103/PhysRevE.97.032611]

''2017''

:''104''| Norihiro Oyama, John J. Molina, and Ryoichi Yamamoto,&br;
Do hydrodynamically assisted binary collisions lead to orientational ordering of microswimmers?&br;
''Eur. Phys. J. E'' 40, 95 (2017).
[http://dx.doi.org/10.1140/epje/i2017-11586-4]

:''103''| Norihiro Oyama, John J. Molina, and Ryoichi Yamamoto,&br;
Simulations of model micro-swimmers with fully resolved hydrodynamics,&br;
''J. Phys. Soc. Jpn.,'' 86, 101008 (2017).
[http://dx.doi.org/10.7566/JPSJ.86.101008]

:''102''| Gregory Lecrivain, Ryoichi Yamamoto, Uwe Hampel, and Takashi Taniguchi,&br;
Direct numerical simulation of an arbitrarily shaped particle at a fluidic interface,&br;
''Phys. Rev. E'' 95, 063107 (2017).
[http://dx.doi.org/10.1103/PhysRevE.95.063107]

:''101''| Samia Mehdi, Adnan Hamid, Atta Ullah, and Ryoichi Yamamoto,&br;
Microstructure of Rod like Sedimenting Particles: Direct Numerical Simulations,&br;
''14th International Bhurban Conference on Applied Sciences and Technology (IBCAST)'', 622-626 (2017). 
[http://dx.doi.org/10.1109/IBCAST.2017.7868115]

:''100''| Simon K. Schnyder, Yuki Tanaka, John J. Molina, and Ryoichi Yamamoto,&br;
Collective motion of cells crawling on a substrate: roles of cell shape and contact inhibition, &br;
''Scientific Reports'' 7, 5163 (2017).
[http://dx.doi.org/10.1038/s41598-017-05321-0]

''2016''

:''99''| Gregory Lecrivain, Ryoichi Yamamoto, Uwe Hampel, and Takashi Taniguchi,&br;
Direct numerical simulation of a single particle attachment on a stationary immersed bubble,&br;
''Phys. Fluids'' 28, 083301 (2016).
[http://dx.doi.org/10.1063/1.4960627]

:''98''| Norihiro Oyama, John J. Molina, Ryoichi Yamamoto,&br;
Purely hydrodynamic origin for swarming of swimming particles,&br;
''Phys. Rev. E'' 93, 043114 (2016).
[http://dx.doi.org/10.1103/PhysRevE.93.043114]

:''97''| John J. Molina, Kotaro Otomura, Hayato Shiba, Hideki Kobayashi, Masaki Sano, and Ryoichi Yamamoto,&br;
Rheological evaluation of colloidal dispersions using the smooth profile method: formulation and applications,&br;
''J. Fluid Mech.'' 792, 590-619 (2016).
[http://dx.doi.org/10.1017/jfm.2016.78]

:''96''| Shugo Yasuda and Ryoichi Yamamoto,&br;
Synchronized molecular-dynamics simulation for the thermal lubrication of a polymeric liquid between parallel plates,&br;
''Computers and Fluids'' 124, 185-189 (2016).
[http://dx.doi.org/10.1016/j.compfluid.2015.05.018]

''2015''

:''95''| Chunyu Shih, John J. Molina, and Ryoichi Yamamoto,&br;
Dynamic polarization of a charged colloid in an oscillating electric field,&br;
''Molec. Phys.'' 113, 2511-2522 (2015).
[http://dx.doi.org/10.1080/00268976.2015.1059510]

:''94''| Andrew J. Dunleavy, Karoline Wiesner, Ryoichi Yamamoto, and C. Patrick Royall,&br;
Mutual information reveals multiple structural relaxation mechanisms in a model glassformer,&br;
''Nature Communications'' 6, 6089 (2015).
[http://dx.doi.org/10.1038/ncomms7089]

:''93''| Gregory Lecrivain, Giacomo Petrucci, Uwe Hampel and Ryoichi Yamamoto,&br;
Attachment of solid elongated particles on the surface of a stationary gas bubble,&br;
''Int. J. Multiphase Flow'' 71, 83-93 (2015).
[http://dx.doi.org/10.1016/j.ijmultiphaseflow.2015.01.002]

:''92''| Shugo Yasuda and Ryoichi Yamamoto,&br;
Multiscale simulation for thermo-hydrodynamic lubrication of a polymeric liquid between parallel plate,&br;
''Molec. Simulation'' 41, 1002-1005 (2015).
[http://dx.doi.org/10.1080/08927022.2014.951639]

:''91''| Adnan Hamid, John J. Molina, and Ryoichi Yamamoto,&br;
Simulation studies of microstructure of colloids in sedimentation,&br;
''Molec. Simulation'' 41, 968-973 (2015).
[http://dx.doi.org/10.1080/08927022.2014.929124]

''2014''

:''90''| Shugo Yasuda and Ryoichi Yamamoto,&br;
Synchronized molecular dynamics simulation via macroscopic heat and momentum
transfer: an application to polymer lubrication,&br;
''Phys. Rev. X'' 4, 041011 (2014).
[http://dx.doi.org/10.1103/PhysRevX.4.041011]

:''89''| Adnan Hamid, John J. Molina, and Ryoichi Yamamoto,&br;
Direct Numerical Simulations of Sedimenting Spherical Particles at Finite Reynolds Number,&br;
''RSC Advances'' 4, 53681-53693 (2014).
[http://dx.doi.org/10.1039/C4RA11025K]

:''88''| Chunyu Shih and Ryoichi Yamamoto,&br;
Dynamic Electrophoresis of Charged Colloids in an Alternating Electric Field,&br;
''Phys. Rev. E'' 89, 062317 (2014).
[http://dx.doi.org/10.1103/PhysRevE.89.062317]

:''87''| John J. Molina and Ryoichi Yamamoto,&br;
Diffusion of colloidal particles in swimming suspensions,&br;
''Molec. Phys.'' 112, 1389-1397 (2014).
[http://dx.doi.org/10.1080/00268976.2014.903004]

''2013''

:''86''| John J. Molina and Ryoichi Yamamoto,&br;
Direct numerical simulations of rigid body dispersions. I. Mobility/Friction tensors of assemblies of spheres,&br;
''J. Chem. Phys.'' 139, 234105 (2013).
[http://dx.doi.org/10.1063/1.4844115]

:''85''| Adnan Hamid, John J. Molina, and Ryoichi Yamamoto,&br;
Sedimentation of non-Brownian spheres at high volume fraction,&br;
''Soft Matter'' 9, 10056-10068 (2013).
[http://dx.doi.org/10.1039/c3sm50748c]

:''84''| Rei Tatsumi and Ryoichi Yamamoto,&br;
Velocity relaxation of a particle in a confined compressible fluid,&br;
''J. Chem. Phys.'' 138, 184905 (2013).
[http://dx.doi.org/10.1063/1.4804186]

:''83''| John J. Molina, Yasuya Nakayama, and Ryoichi Yamamoto,&br;
Hydrodynamic interactions of self-propelled swimmers,&br;
''Soft Matter'' 9, 4923-4936 (2013).
[http://dx.doi.org/10.1039/c3sm00140g]

:''82''| Rei Tatsumi and Ryoichi Yamamoto,&br;
Propagation of hydrodynamic interactions between particles in a compressible fluid,&br;
''Phys. Fluids'' 25, 046101 (2013).
[http://dx.doi.org/10.1063/1.4802038]

:''81''| Hideyuki Mizuno and Ryoichi Yamamoto,&br;
General constitutive model for supercooled liquids: Anomalous transverse wave propagation,&br;
''Phys. Rev. Lett.'' 110, 095901 (2013).
[http://dx.doi.org/10.1103/PhysRevLett.110.095901]

:''80''| Adnan Hamid and Ryoichi Yamamoto,&br;
Direct numerical simulations of anisotropic diffusion of spherical particles in sedimentation,&br;
''Phys. Rev. E'' 87, 022310 (2013).
[http://dx.doi.org/10.1103/PhysRevE.87.022310]

:''79''| Adnan Hamid and Ryoichi Yamamoto,&br;
Sedimentation at Finite Peclet Number: Direct Numerical Simulation,&br;
''AIP Conf. Proc.'' 1518, 444-447 (2013).
[http://dx.doi.org/10.1063/1.4794612]

:''78''| Adnan Hamid and Ryoichi Yamamoto,&br;
Anisotropic velocity fluctuations and particle diffusion in sedimentation,&br;
''J. Phys. Soc. Jpn.'' 82, 024004 (2013).
[http://dx.doi.org/10.7566/JPSJ.82.024004]

:''77''| Takahiro Murashima, Shugo Yasuda, Takashi Taniguchi, and Ryoichi Yamamoto,&br;
Multiscale modeling for polymeric flow: Particle-fluid bridging scale methods,&br;
''J. Phys. Soc. Jpn.'' 82, 012001 (2013).
[http://dx.doi.org/10.7566/JPSJ.82.012001]

''2012''

:''76''| Yuki Matsuoka, Tomonori Fukasawa, Ko Higashitani, and Ryoichi Yamamoto,&br;
Effect of hydrodynamic interactions on rapid Brownian coagulation of colloidal dispersions,&br;
''Phys. Rev. E'' 86, 051403 (2012).
[http://dx.doi.org/10.1103/PhysRevE.86.051403]

:''75''| Yuki Matsuoka, Hideyuki Mizuno, and Ryoichi Yamamoto,&br;
Acoustic wave propagation through a supercooled liquid: A normal mode analysis,&br;
''J. Phys. Soc. Jpn.'' 81, 124602 (2012).
[http://dx.doi.org/10.1143/JPSJ.81.124602]

:''74''| Yukitaka Ishimoto, Takahiro Murashima, Takashi Taniguchi, and Ryoichi Yamamoto,&br;
Two-dimensional lattice liquid models,&br;
''Phys. Rev. E'' 86, 031124 (2012).
[http://dx.doi.org/10.1103/PhysRevE.86.031124]

:''73''| Rei Tatsumi and Ryoichi Yamamoto, &br;
Direct numerical simulation of dispersed particles in a compressible fluid,&br;
''Phys. Rev. E'' 85, 066704 (2012).
[http://dx.doi.org/10.1103/PhysRevE.85.066704]

:''72''| Hideyuki Mizuno and Ryoichi Yamamoto, &br;
Mechanical Responses and Stress Fluctuations of a Strongly Sheared Supercooled Liquid,&br;
''Eur. Phys. J. E'' 35, 29 (2012). 
[http://dx.doi.org/10.1140/epje/i2012-12029-6]

:''71''| Hideyuki Mizuno and Ryoichi Yamamoto, &br;
Dynamical heterogeneity in a highly supercooled liquid under a sheared situation,&br;
''J. Chem. Phys.'' 136, 084505 (2012). 
[http://dx.doi.org/10.1063/1.3688227]

:''70''| Masayuki Uranagase, Takashi Taniguchi, and Ryoichi Yamamoto,&br;
Electrostatic potential around a charged colloidal particle in an electrolyte solution with ion strong coupling,&br;
''J. Phys. Soc. Jpn.'' 81 024803 (2012).
[http://dx.doi.org/10.1143/JPSJ.81.024803]

''2011''

:''69''| Hideki Kobayashi and Ryoichi Yamamoto, &br;
Re-entrant transition in the shear viscosity of dilute rigid rod dispersions,&br;
''Phys. Rev. E'' 84 051404 (2011).
[http://dx.doi.org/10.1103/PhysRevE.84.051404]

:''68''| Hideyuki Mizuno and Ryoichi Yamamoto,&br;
Dynamical heterogeneity in a highly supercooled liquid: Its correlation length, intensity, and lifetime,&br;
''Phys. Rev. E'' 84, 011506 (2011).
[http://dx.doi.org/10.1103/PhysRevE.84.011506]

:''67''| Shugo Yasuda and Ryoichi Yamamoto,&br;
Dynamic rheology of a supercooled polymer melt in non-uniform oscillating flows in rapidly oscillating plates,&br;
''Phys. Rev. E'' 84, 031501 (2011).
[http://dx.doi.org/10.1103/PhysRevE.84.031501]

:''66''| Hideki Kobayashi and Ryoichi Yamamoto,&br;
Implementation of Lees-Edwards periodic boundary conditions for direct numerical simulations of particle dispersions under shear flow,&br;
''J. Chem. Phys.'' 134, 064110 (2011).
[http://dx.doi.org/10.1063/1.3537974]

:''65''| Saeed Jafari, Ryoichi Yamamoto, and Mohamad Rahnama,&br;
Lattice-Boltzmann method combined with smoothed-profile method for particulate suspensions, &br;
''Phys. Rev. E'' 83, 026702 (2011).
[http://dx.doi.org/10.1103/PhysRevE.83.026702]

''2010''

:''64''| Hideyuki Mizuno and Ryoichi Yamamoto,&br;
Lifetime of dynamical heterogeneity in a highly supercooled liquid,&br;
''Phys. Rev. E'' 82, 030501 (2010).
[http://dx.doi.org/10.1103/PhysRevE.82.030501]

:''63''| Takuya Iwashita, Takuya Kumagai and Ryoichi Yamamoto,&br;
A direct numerical simulation method for complex modulus of particle dispersions,&br;
''Eur. Phys. J. E'' 32, 357-363 (2010). 
[http://dx.doi.org/10.1140/epje/i2010-10638-7]

:''62''| Hideki Kobayashi and Ryoichi Yamamoto,&br;
Tumbling motion of a single chain in shear flow: a crossover from Brownian to non-Brownian behavior,&br;
''Phys. Rev. E'' 81, 041807, (2010).
[http://dx.doi.org/10.1103/PhysRevE.81.041807]

:''61''| Yasuya Nakayama, Kang Kim, and Ryoichi Yamamoto, &br;
Direct simulation of flowing colloidal dispersions by smoothed profile method,&br;
''Advanced Powder Technology'' 21, 206–211 (2010).
[http://dx.doi.org/10.1016/j.apt.2009.11.011]

:''60''| Shugo Yasuda and Ryoichi Yamamoto, &br;
Multiscale modeling and simulation for polymer melt flows between parallel plates,&br;
''Phys. Rev. E'' 81, 036308 (2010).
[http://dx.doi.org/10.1103/PhysRevE.81.036308]

''2009''

:''59''| Takuya Iwashita and Ryoichi Yamamoto, &br;
Direct numerical simulations for non-Newtonian rheology of concentrated particle dispersions,&br;
''Phys. Rev. E'' 80, 061402 (2009).
//preprint, http://arxiv.org/abs/0905.0130
[http://dx.doi.org/10.1103/PhysRevE.80.061402]

:''58''| Ryoichi Yamamoto, Yasuya Nakayama, and Kang Kim,&br;
Smoothed profile method to simulate colloidal particles in complex fluids,&br;
''Int. J. Mod. Phys. C'' 20, 1457-1465 (2009). 
[http://dx.doi.org/10.1142/S0129183109014515]

:''57''| Shugo Yasuda and Ryoichi Yamamoto, &br;
Rheological properties of polymer melt between rapidly oscillating plates: an application of multiscale modeling,&br;
''EPL'' 86, 18002 (2009). 
[http://dx.doi.org/10.1209/0295-5075/86/18002]

:''56''| Takuya Iwashita, Yasuya Nakayama, and Ryoichi Yamamoto, &br;
Velocity autocorrelation function of fluctuating particles in incompressible fluids, -Toward direct numerical simulation of particle dispersions-,&br;
''Prog. Theor. Phys. Suppl.'' 178, 86-91 (2009). 
[http://dx.doi.org/10.1143/PTPS.178.86]

:''55''| Takuya Iwashita and Ryoichi Yamamoto,&br;
Short-time motion of Brownian particles in a shear flow,&br;
''Phys. Rev. E'' 79, 031401 (2009). 
[http://dx.doi.org/10.1103/PhysRevE.79.031401]

''2008''

:''54''| Shugo Yasuda and Ryoichi Yamamoto,&br;
A Model for Hybrid Simulations of Molecular Dynamics and Computational Fluid Dynamics,&br;
''Phys. Fluids'' 20, 113101 (2008). 
[http://dx.doi.org/10.1063/1.3003218]

:''53''| Ryoichi Yamamoto, Kang Kim, Yasuya Nakayama, K. Miyazaki, and D.R. Reichman,&br;
On the role of hydrodynamic interactions in colloidal gelation,&br;
''J. Phys. Soc. Jpn.'' 77, 084804 (2008). 
[http://dx.doi.org/10.1143/JPSJ.77.084804]

:''52''| Takuya Iwashita, Yasuya Nakayama, and Ryoichi Yamamoto,&br;
A numerical model for Brownian particles fluctuating in incompressible fluids,&br;
''J. Phys. Soc. Jpn.'' 77, 074007, (2008). 
[http://dx.doi.org/10.1143/JPSJ.77.074007]

:''51''| Yasuya Nakayama, Kang Kim and Ryoichi Yamamoto,&br;
Simulating (electro) hydrodynamic effects in colloidal dispersions: smoothed profile method,&br;
''Eur. Phys. J. E'' 26, 361-368 (2008). 
[http://dx.doi.org/10.1140/epje/i2007-10332-y]

''2007''

:''50''| Ryoichi Yamamoto, Kang Kim, and Yasuya Nakayama,&br;
Strict simulations of non-equilibrium dynamics of colloids,&br;
''Colloids and Surfaces A'': Physicochemical and Engineering Aspects, 311, 42-47 (2007). 
[http://dx.doi.org/10.1016/j.colsurfa.2007.08.041]

''2006''

:''49''| Ryoichi Yamamoto, Kang Kim, and Yasuya Nakayama,&br;
KAPSEL: Kyoto Advanced Particle Simulator for ELectrohydrodynamics: Toward Direct Numerical Simulations of Colloidal Dispersions,&br;
''KONA'' 24, 167-182 (2006). 
[http://dx.doi.org/10.14356/kona.2006019]

:''48''| Kang Kim, Yasuya Nakayama, and Ryoichi Yamamoto,&br;
Direct Numerical Simulations of Electrophoresis,&br;
''Phys. Rev. Lett.'' 96, 208302 (2006). 
[http://dx.doi.org/10.1103/PhysRevLett.96.208302]

:''47''| Kang Kim, Yasuya Nakayama, and Ryoichi Yamamoto,&br;
Simulating electrohydrodynamics in charged colloidal dispersions: A smoothed profile method,&br;
''AIP Conf. Proc.'' 832, 251-256 (2006). 
[http://dx.doi.org/10.1063/1.2204501]

:''46''| Yasuya Nakayama, Kang Kim, and Ryoichi Yamamoto,&br;
Hydrodynamic effects in colloidal dispersions studied by a new efficient direct simulation,&br;
''AIP Conf. Proc.'' 832, 245-250 (2006). 
[http://dx.doi.org/10.1063/1.2204500]

:''45''| Ryoichi Yamamoto,&br;
Supercooled Liquids under Shear: Computational Approach,&br;
''Computer Simulation Studies in Condensed Matter Physics XVI''; Ed. D.P. Landau, S.P Lewis, and H.B. Schuttler (Springer, Berlin, 2006) p.61-73. 
//"[[ISBN-13: 978-3540265641:http://www.amazon.com/Computer-Simulation-Studies-Condensed-Matter-Physics/dp/3540265643]]"
[http://dx.doi.org/10.1007/3-540-26565-1_6]

''2005''

:''44''| Kang Kim and Ryoichi Yamamoto,&br;
Efficient simulations of charged colloidal dispersions: A density functional approach,&br;
''Macromol. Theory Simul.'' 14, 278-284 (2005). 
[http://dx.doi.org/10.1002/mats.200400068]

:''43''| Yasuya Nakayama and Ryoichi Yamamoto,&br;
A Simulation Method to Resolve Hydrodynamic Interactions in Colloidal Dispersions,&br;
''Phys. Rev. E'' 71, 036707 (2005). 
[http://dx.doi.org/10.1103/PhysRevE.71.036707]

:''42''| Ryoichi Yamamoto, Yasuya Nakayama, and Kang Kim,&br;
A Method to Resolve Hydrodynamic Interactions in Colloidal Dispersions,&br;
''Comp. Phys. Comm.'' 169, 301-304 (2005). 
[http://dx.doi.org/10.1016/j.cpc.2005.03.067]

:''41''| Kang Kim, Yasuya Nakayama, and Ryoichi Yamamoto,&br;
A Smoothed Profile Method for Simulating Charged Colloidal Dispersions,&br;
''Comp. Phys. Comm.'' 169, 104-106 (2005). 
[http://dx.doi.org/10.1016/j.cpc.2005.03.024]

:''40''| Toshiyuki Hamanaka, Ryoichi Yamamoto, and Akira Onuki,&br;
Molecular Dynamics Simulation of Heat-Conducting Near-Critical Fluids,&br;
''Phys. Rev. E'' 71, 011507 (2005). 
[http://dx.doi.org/10.1103/PhysRevE.71.011507]

''2004''

:''39''| Ryoichi Yamamoto and Akira Onuki,&br;
Entanglements in a quiescent and sheared polymer melt,&br;
''Phys. Rev. E'' 70, 041801 (2004). 
also selected for the October 15, 2004 issue of Virtual Journal of Biological Physics Research.
[http://dx.doi.org/10.1103/PhysRevE.70.041801]

:''38''| Kunimasa Miyazaki, David R. Reichman, and Ryoichi Yamamoto,&br;
Supercooled Liquids under Shear: Theory and Simulation,&br;
''Phys. Rev. E'' 70, 011501 (2004). 
[http://dx.doi.org/10.1103/PhysRevE.70.011501]

:''37''| Ryoichi Yamamoto, Yasuya Nakayama, and Kang Kim,&br;
A Smooth Interface Method for Simulating Colloidal Dispersions,&br;
''J. Phys.; Condens. Matt.'' 16, S1945-S1955 (2004). 
[http://dx.doi.org/10.1088/0953-8984/16/19/007]

:''36''| Kunimasa Miyazaki, Ryoichi Yamamoto, and David R. Reichman,&br;
Supercooled Liquids under Shear: A Mode-Coupling Approach,&br;
''AIP Conf. Proc.'' 708, 635-638. (2004). 
[http://dx.doi.org/10.1063/1.1764242]

:''35''| Ryoichi Yamamoto, Kunimasa Miyazaki, and David R. Reichman,&br;
Supercooled Liquids under Shear: Computational Approach,&br;
''AIP Conf. Proc.'' 708, 717-718 (2004). 
[http://dx.doi.org/10.1063/1.1764277]

''2002''

:''34''| Ryoichi Yamamoto and Akira Onuki,&br;
Dynamics and Rheology of a supercooled polymer melt in shear flow,&br;
''J. Chem. Phys.'' 117 2359-2367 (2002). 
[http://dx.doi.org/10.1063/1.1488589]

''2001''

:''33''| Ryoichi Yamamoto,&br;
Simulating particle dispersions in nematic liquid-crystal solvents,&br;
''Phys. Rev. Lett.'' 87, 075502 (2001). 
[http://dx.doi.org/10.1103/PhysRevLett.87.075502]

:''32''| Walter Kob, C. Brangian, T. Stuehn, and Ryoichi Yamamoto,&br;
Equilibrating glassy systems with parallel tempering,&br;
''Computer Simulation Studies in Condensed Matter Physics XIII''; Ed. D.P. Landau, S.P Lewis, and H.B. Schuttler (Springer, Berlin, 2001) p.153-166. 
//"[[ISBN:3540411909:http://www.reviewscout.com/3540411909]]"
[http://dx.doi.org/10.1007/978-3-642-56577-9_18]

''2000''

:''31''| Ryoichi Yamamoto and Kang Kim,&br;
Heterogeneity and finite size effects in the dynamics of supercooled liquids,&br;
''J. Phys. IV France'' 10, 15-20 (2000). 
[http://dx.doi.org/10.1051/jp4:2000703]

:''30''| Ryoichi Yamamoto and Akira Onuki,&br;
Dynamics of Highly Supercooled Liquids far from Equilibrium,&br;
''J. Phys.; Cond. Matt.'' 12, 6323-6334 (2000). 
[http://dx.doi.org/10.1088/0953-8984/12/29/304]

:''29''| Ryoichi Yamamoto and Walter Kob,&br;
Replica-exchange molecular dynamics simulation for supercooled liquids,&br;
''Phys. Rev. E'' 61, 5473-5476 (2000). 
[http://dx.doi.org/10.1103/PhysRevE.61.5473]

:''28''| Ryoichi Yamamoto and Akira Onuki,&br;
Dynamics and Rheology of a Supercooled Polymer Melt,&br;
''AIP Conf. Proc.'' 519, 151-157 (2000). 
[http://dx.doi.org/10.1063/1.1291531]

:''27''| Ryoichi Yamamoto and Akira Onuki,&br;
Dynamics and Rheology of a Supercooled Polymer Melt,&br;
''Prog. Theor. Phys. Suppl.'' 138, 336-341 (2000). 
[http://dx.doi.org/10.1143/PTPS.138.336]

:''26''| Kang Kim and Ryoichi Yamamoto,&br;
Apparent finite-size effect in the dynamics of supercooled liquids,&br;
''Phys. Rev. E'' 61, R41-R44 (2000). 
[http://dx.doi.org/10.1103/PhysRevE.61.R41]

''1999''

:''25''| Ryoichi Yamamoto and Akira Onuki,&br;
Large scale long-lived heterogeneity in the dynamics of supercooled liquids,&br;
''Int. J. Mod. Phys. C'' 10, 1553-1561 (1999). 
[http://dx.doi.org/10.1142/S0129183199001339]

:''24''| Hideki Tanaka and Ryoichi Yamamoto, Kenichiro Koga, and Xiao C. Zeng,&br;
Can thin disk-like ice clusters be more stable than compact droplet-like ice clusters?&br;
''Chem. Phys. Lett.'' 304, 378-384 (1999). 
[http://dx.doi.org/10.1016/S0009-2614(99)00293-6]

:''23''| Ryoichi Yamamoto and Xiao C. Zeng,&br;
Molecular dynamics study of a phase-separating binary fluid mixture under shear flow,&br;
''Phys. Rev. E'' 59, 3223-3230 (1999). 
[http://dx.doi.org/10.1103/PhysRevE.59.3223]

:''22''| Ryoichi Yamamoto and Akira Onuki,&br;
Dynamics of Highly Supercooled Liquids,&br;
''AIP Conf. Proc.'' 469, 476-483 (1999). 
[http://dx.doi.org/10.1063/1.58529]

''1998''

:''21''| Ryoichi Yamamoto and Akira Onuki,&br;
Heterogeneous Diffusion in Highly Supercooled Liquids,&br;
''Phys. Rev. Lett.'' 81, 4915-4018 (1998). 
[http://dx.doi.org/10.1103/PhysRevLett.81.4915]

:''20''| Ryoichi Yamamoto and Akira Onuki,&br;
Dynamics of Highly Supercooled Liquids; Heterogeneity, Rheology, and Diffusion,&br;
''Phys. Rev. E'' 58, 3515-3529 (1998). 
[http://dx.doi.org/10.1103/PhysRevE.58.3515]

:''19''| Akira Onuki and Ryoichi Yamamoto,&br;
Kinetic Heterogeneities and Nonlinear Rheology of Highly Supercooled Liquids,&br;
''J. Non-cryst. Solid.'' 235-237, 34-40 (1998). 
[http://dx.doi.org/10.1016/S0022-3093(98)00558-4]

''1997''

:''18''| Ryoichi Yamamoto and Akira Onuki,&br;
Nonlinear Rheology of a Highly Supercooled Liquid,&br;
''EPL'' 40, 61-66 (1997). 
[http://dx.doi.org/10.1209/epl/i1997-00419-1]

:''17''| Ryoichi Yamamoto and Akira Onuki,&br;
Kinetic Heterogeneities in a Highly Supercooled Liquid,&br;
''J. Phys. Soc. Jpn.'' 66, 2545-2548 (1997). 
[http://dx.doi.org/10.1143/JPSJ.66.2545]

:''16''| Ryoichi Yamamoto, M. Kano, and Yoji Kawamoto,&br;
Computer simulation of ionic conduction in ZrF_4-BaF_2 glass, II. Normal mode analysis,&br;
''J. Phys.: Cond. Matt.'' 9, 5157-5166 (1997). 
[http://dx.doi.org/10.1088/0953-8984/9/24/014]

:''15''| Akira Onuki, Ryoichi Yamamoto, and Takashi Taniguchi,&br;
Viscoelastic effects and shear-induced phase separation in polymer solutions in polymer solutions,&br;
''Progr. Colloid. Polym. Sci.'' 106, 150-157 (1997). 
[http://dx.doi.org/10.1007/BFb0111049]

:''14''| Akira Onuki, Ryoichi Yamamoto, and Takashi Taniguchi,&br;
Phase separation in polymer solutions induced by shear,&br;
''J. Phys. II France'' 7, 295-304 (1997). 
[http://dx.doi.org/10.1051/jp2:1997126]

''1996''

:''13''| Sigenobu Matsuo, Y. Mizuguchi, Yoshiyuki Tanaka, Hironobu Kubota, and Ryoichi Yamamoto,&br;
Volumetric properties of mixtures of 1,4-dioxane and water at high pressures,&br;
''Int. J. Thermophys.'' 17, 441-454 (1996). 
[http://dx.doi.org/10.1007/BF01443402]

:''12''| Ryoichi Yamamoto and Koichiro Nakanishi,&br;
Computer simulation of vapor-liquid phase separation,&br;
''Molec. Simulation'' 16, 119-126 (1996). 
[http://dx.doi.org/10.1080/08927029608024066]

''1995''

:''11''| Ryoichi Yamamoto, T. Kobayashi, and Yoji Kawamoto,&br;
Computer simulation of ionic conduction in ZrF_4-BaF_2 glass,&br;
''J. Phys.: Cond. Matt.'' 7, 8557-8567 (1995). 
[http://dx.doi.org/10.1088/0953-8984/7/45/011]

:''10''| Masahide Takahashi, Ryoichi Yamamoto, Ryoji Kanno, and Yoji Kawamoto,&br;
Molecular dynamics simulation of Er^{3+}-doped chlorofluorozirconate glasses,&br;
''J. Phys.; Cond. Matt.'' 7, 4583-4592 (1995). 
[http://dx.doi.org/10.1088/0953-8984/7/24/001]

:''9''| Ryoichi Yamamoto, Osamu Kitao, and Koichiro Nakanishi,&br;
Can the van der Waals loop vanish?, Effect of domain size,&br;
''Molec. Phys.'' 84, 757-768 (1995). 
[http://dx.doi.org/10.1080/00268979500100521]

:''8''| Ryoichi Yamamoto, Osamu Kitao, and Koichiro Nakanishi,&br;
Monte Carlo Simulation of Fluoro Propane,&br;
''Fluid Phase Equilibria'' 104, 349-361 (1995). 
[http://dx.doi.org/10.1016/0378-3812(94)02660-S]

:''7''| Ryoichi Yamamoto and Koichiro Nakanishi,&br;
Computer simulation of vapor-liquid phase separation in two- and three-dimensional fluids. II. Domain structure,&br;
''Phys. Rev. B'' 51, 2715-2722 (1995). 
[http://dx.doi.org/10.1103/PhysRevB.51.2715]

''1994''

:''6''| Ryoichi Yamamoto, Hideki Tanaka, Koichiro Nakanishi, and Xiao C. Zeng,&br;
Can the van der Waals loop vanish?, Effect of surface free energy,&br;
''Chem. Phys. Lett.'' 231, 401-406 (1994). 
[http://dx.doi.org/10.1016/0009-2614(94)01268-7]

:''5''| Ryoichi Yamamoto and Koichiro Nakanishi,&br;
Computer simulation of vapor-liquid phase separation in two- and three-dimensional fluids. Growth law of domain size,&br;
''Phys. Rev. B'' 49, 14958-14966 (1994). 
[http://dx.doi.org/10.1103/PhysRevB.49.14958]

:''4''| Ryoichi Yamamoto, Osamu Kitao, and Koichiro Nakanishi,&br;
Intermolecular Interaction of Fluoro Propanes,&br;
''Molec. Simulation'' 12, 383-391 (1994). 
[http://dx.doi.org/10.1080/08927029408023045]

:''3''| Sigenobu Matsuo, Ryoichi Yamamoto, Hironobu Kubota, and Yoshiyuki Tanaka,&br;
Volumetric Properties of Mixtures of Fluoroalcohols and Water at High Pressures,&br;
''Int. J. Thermophys.'' 15, 245-259 (1994). 
[http://dx.doi.org/10.1007/BF01441585]

''1993''

:''2''| Sigenobu Matsuo, Ryoichi Yamamoto, Yoshiyuki Tanaka, and Hironobu Kubota,&br;
Viscosity of Mixtures of Fluoroalcohols and Water at High Pressures,&br;
''Int. J. Thermophys.'' 14, 835-849 (1993).
[http://dx.doi.org/10.1007/BF00502111]

:''1''| Ryoichi Yamamoto, Sigenobu Matsuo, and Yoshiyuki Tanaka,&br;
Thermal Conductivity of Halogenated Ethanes, HFC-134a, HCFC-123 and HCFC-141b,&br;
''Int. J. Thermophys.'' 14, 79-90 (1993).
[http://dx.doi.org/10.1007/BF00522663]

*** Books [#s5fef318]
+ John. J. Molina, Ryoichi Yamamoto, &br;
Chapter 8 of "''Computer Simulation of Polymeric Materials: Applications of the OCTA System''", (Springer, 2016) ISBN:978-9811008146 
[http://dx.doi.org/10.1007/978-981-10-0815-3]
&br;&br;
+ Kang Kim, Yasuya Nakayama, and Ryoichi Yamamoto, &br;
Chapters 8 and 9 of "''Electrical Phenomena at Interfaces and Biointerfaces: Fundamentals and Applications in Nano-, Bio-, and Environmental Sciences''" (Wiley, 2012) ISBN:978-0470582558
[http://dx.doi.org/10.1002/9781118135440.ch8]
[http://dx.doi.org/10.1002/9781118135440.ch9]
&br;&br;
+ Ryoichi Yamamoto, &br;
Section 5.25.6 of "''Powder Technology Handbook, 4th Edition''", (CRC Press, 2019) ISBN 9781138739222

*** Proceedings, etc. [#m47cfe1f]

+ Ryoichi Yamamoto, John J. Molina, and Rei Tatsumi,&br;
Simulating colloids and self-propelled particles with fully resolved hydrodynamics using the smoothed profile method (SPM),&br;
Proceedings for the "Workshop on Hybrid Particle-Continuum Methods in Computational Materials Physics"
(Jülich, Germany, 4-7 March 2013) p.11-24.
"[[ISBN:978-3-89336-849-5:http://juser.fz-juelich.de/record/132949/files/NIC_Series_46.pdf]]"
&br;&br;
+ Shugo Yasuda and Ryoichi Yamamoto, &br;
Multiscale simulation for polymer melt flows in parallel plates, &br;
MMM2010 Conference Proceedings, 659--662 (2010).
&br;&br;
+ Yasuya Nakayama, Kang Kim and Ryoichi Yamamoto,&br;
Smoothed Profile Method for Direct Simulation of Flowing (Charged) Colloids in Solvents,&br;
AES Technical Reviews Part A: International Journal of Nano and Advanced Engineering Materials 1, 21-28 (2008). 
//"[[doi>:http://dx.doi.org/]]"
[http://aix1.uottawa.ca/~yhaddad/AESTR_About.htm]
&br;&br;
+ Ryoichi Yamamoto, Yasuya Nakayama, and Kang Kim,&br;
A Smoothed Profile Method for Colloidal Dispersions,&br;
Advances in Science and Technology 43, 3rd International Conference "Computational Modeling and Simulation of Materials" Part B, Ed. P. Vincenzini and A. Lami (Techna Group Srl, Faenza - Italy, 2004) p.27-32. "[[ISBN:8886538464:http://www.reviewscout.com/8886538464]]"
&br;&br;
+ Yasuya Nakayama and Ryoichi Yamamoto,&br;
Resolving the Hydrodynamic Interaction in Particle Suspensions,&br;
Advances in Science and Technology 43, 3rd International Conference "Computational Modeling and Simulation of Materials" Part B, Ed. P. Vincenzini and A. Lami (Techna Group Srl, Faenza - Italy, 2004) p.77-84. "[[ISBN:8886538464:http://www.reviewscout.com/8886538464]]"
&br;&br;
+ Kang Kim and Ryoichi Yamamoto,&br;
Simulation Study of Charged Colloidal Particles in Electrolyte Solutions,&br;
Advances in Science and Technology 43, 3rd International Conference "Computational Modeling and Simulation of Materials" Part B, Ed. P. Vincenzini and A. Lami (Techna Group Srl, Faenza - Italy, 2004) p.33-40. "[[ISBN:8886538464:http://www.reviewscout.com/8886538464]]"
&br;&br;
+ Ryoichi Yamamoto and Akira Onuki,&br;
Dynamics of Highly Supercooled Liquids under Shear,&br;
Proceedings of the Complex Liquids Symposium, Ed. F. Yonezawa (World Scientific, Singapore, 1998) p.242-257 "[[ISBN:981023631X:http://www.reviewscout.com/981023631X]]"
&br;&br;
+ Akira Onuki and Ryoichi Yamamoto,&br;
Nonlinear Rheology of Highly Supercooled Liquids,&br;
Proceedings of the 2nd Tohwa University International Meeting "Statistical Physics" Ed. M.Tokuyama and I.Oppenheim (World Scientific, Singapore, 1998) p.26-29. "[[ISBN:9810233795:http://www.reviewscout.com/9810233795]]"
&br;&br;
+ Yoshiyuki Tanaka, S. Matsuo, C. Takata, and Ryoichi Yamamoto,&br;
Thermal Conductivity of Environmentally Acceptable Alternatives to Fully Halogenated Chlorofluorocarbones,&br;
Proc. China-Japan Chem. Eng. Conf. (Tianjin, China, 1991) p.80-87.

*** Articles in Japanese [#lbc423f2]

- [[CiNiiで"山本 量一"を検索:https://cir.nii.ac.jp/all?q=%E5%B1%B1%E6%9C%AC+%E9%87%8F%E4%B8%80]]

----

+ 山本量一,&br;
第1章 粒子の性質と測定 1.10 単一粒子の運動と拡散 1.10.3 Brown運動,
粉体工学会誌 56, 272-277, (2019). [http://dx.doi.org/10.4164/sptj.56.272]
&br;&br;
+ 山本量一,&br;
アクティブマターのモデリング:水中を泳ぐ微生物/基板上で遊走・増殖する細胞,
分子シミュレーション研究会会誌"アンサンブル",20, 173-178, (2018).
&br;&br;
+ 山本量一,&br;
特集「アクティブマターの物理学」, 
分子シミュレーション研究会会誌"アンサンブル",20, 148, (2018).
&br;&br;
+ 山本量一 ,John J. MOLINA ,Simon K. SCHNYDER, &br;
細胞と組織に対する力学的モデルの構築, 
生物物理, 58 (3),159-162 (2018). [http://dx.doi.org/10.2142/biophys.58.159]
&br;&br;
+ 山本 量一, Molina John J., Schneider Simon K., &br;
基板上で遊走•増殖する細胞集団のモデリング,
Journal of Computer Chemistry, Japan, 17, 14-19 (2018). [https://doi.org/10.2477/jccj.2018-0003]
&br;&br;
+ 山本 量一, &br;
力学的モデルによる細胞の集団運動のシミュレーション,
生産研究, 69, 253-260 (2017). [http://dx.doi.org/10.11188/seisankenkyu.69.253]
&br;&br;
+ 山本量一,大山倫弘,John J. MOLINA,Simon K. SCHNYDER,&br;
ソフトマターのモデリング:非平衡系・生物系への挑戦,
"化学工学"(会誌),Vol.81, 282-285 (2017). [[PDF:http://www.scej.org/docs/publication/journal/backnumber/8106-open-article.pdf]]
&br;&br;
+ 安田修悟, 山本量一,&br;
Synchronized Molecular Dynamics 法による高分子潤滑の解析, 
分子シミュレーション研究会会誌"アンサンブル",17, 30-34, (2015).
&br;&br;
+ 安田修悟, 村島隆浩, 谷口貴志, 山本量一, &br;
ソフトマターのマルチスケールシミュレーション, 
日本シミュレーション学会誌, 31, 23-27, (2012).
&br;&br;
+ 谷口貴志, 山本量一, &br;
"解説:ソフトマターのマルチスケールシミュレーション", 
日本物理學會誌, 67, 317-324, (2012).
&br;&br;
+ 山本量一, &br;
ソフトマターの多階層/相互接続シミュレーション,
「マルチスケール・マルチフィジックス現象の統合シミュレーション」
科学技術振興機構 (ISBN 978-4-9904860-3-7 C0040)
&br;&br;
+ 村島隆浩, 安田修悟, 谷口貴志, 山本量一, &br;
"ソフトマターの多階層・相互接続シミュレーション―高分子メルト
のマルチスケールモデル―", 
工業材料, 60, 27-30, (2012).
&br;&br;
+ 安田修悟, 山本量一, &br;
振動境界層流れにおける高分子液体の動的レオロジー特性, 
分子シミュレーション研究会会誌"アンサンブル", 13, 105 (2011).
&br;&br;
+ 安田修悟,山本量一,&br;
ソフトマターのマルチスケールシミュレーション:高分子溶液の流動解析への応用,
プラズマ・核融合学会誌 85, 607-610 (2009).
"[[CiNii:http://ci.nii.ac.jp/naid/110007360673]]"
&br;&br;
+ 名嘉山祥也, 金鋼, 岩下拓哉, 山本量一, &br;
コロイド分散系の直接数値シミュレーション, 
九州大学応用力学研究所研究集会報告「乱流現象及び多自由度系の動力学、構造と統計法則」19ME-S7. (2008).
&br;&br;
+ 山本量一, &br;
荷電コロイド分散系の計算機シミュレーション,
セラミックス, 43, 77-86 (2008).
"[[CiNii:http://ci.nii.ac.jp/naid/10021138295]]"
&br;&br;
+ 山本量一, &br;
コロイド分散系のハイブリッドシミュレーション,
高分子, 56, 1001 (2007).
"[[CiNii:http://ci.nii.ac.jp/naid/10019981288]]"
&br;&br;
+ 山本量一, 米谷慎, 奥薗透, 福田順一, &br;
液晶の計算機シミュレーション,
液晶, 11, 259-266 (2007).
"[[CiNii:http://ci.nii.ac.jp/naid/10019554009]]"
&br;&br;
+ 名嘉山祥也, 金鋼, 山本量一, &br;
コロイド分散系の直接数値シミュレーション,
ケミカルエンジニヤリング, 52, 340-345 (2007).
"[[CiNii:http://ci.nii.ac.jp/naid/40015457128]]"
&br;&br;
+ 名嘉山祥也, 金鋼, 山本量一, &br;
Smoothed Profile 法によるコロイド系の直接数値シミュレーション,
粉体工学会誌, 44, 191-197 (2007).
"[[CiNii:http://ci.nii.ac.jp/naid/10018893424]]"
&br;&br;
+ 金鋼, 名嘉山祥也, 山本量一, &br;
荷電コロイド分散系の直接数値シミュレーション -KAPSELの原理と操作-,
粉体工学会誌, 44, 28-36 (2007).
"[[CiNii:http://ci.nii.ac.jp/naid/10018721140]]"
&br;&br;
+ 山本量一, 小貫明, &br;
ガラスの非平衡ダイナミクス,
日本物理學會誌, 60, 603-609 (2005). 
"[[CiNii:http://ci.nii.ac.jp/naid/110002078859]]"
&br;&br;
+ 山本量一, 小貫明, &br;
ガラス・過冷却液体における動的不均一性,
高圧力学会誌, 9, 134-141 (1999).
"[[CiNii:http://ci.nii.ac.jp/naid/10002845945]]"
&br;&br;
+ 山本量一, 中西浩一郎, &br;
1994年の化学:シミュレーションによるフラーレン生成過程の解明,
化学, 49, 66-67 (1994).
"[[CiNii:http://ci.nii.ac.jp/naid/40000392343]]"
&br;&br;
+ 松尾成信, 田中嘉之, 田谷智, 山本量一,&br;
混合気体の熱伝導率 −(HFC 32 + HFC125)系−,
熱物性, 8, 207-212 (1994).
&br;&br;
+ 山本量一, 北尾修, 中西浩一郎, &br;
プロパン系フロン代替物質の分子シミュレーション,
JCPE Newsletter, 4, 4-15 (1993).

*** Books in Japanese [#wfff2705]
+ 山本量一,John J. Molina,&br;
第6章, 
「増補版 高分子材料シミュレーション -OCTA活用事例集」公益社団法人新化学技術推進協会 (編),ISBN:978-4873266879(化学工業日報社, 2017)
&br;&br;
+ 山本量一,John J. Molina,&br;
第6章, 
「高分子材料シミュレーション -OCTA活用事例集」公益社団法人新化学技術推進協会 (編),ISBN:978-4873266381(化学工業日報社, 2014)
&br;&br;
+ 金鋼, 名嘉山祥也, 山本量一, &br;
2.23.3.3, 2.23.3.4, 
「粉体工学ハンドブック」粉体工学会(編), ISBN:978-4-254-25267-5(朝倉書店, 2014)
&br;&br;
+ 「マルチスケール・マルチフィジックス現象の統合シミュレーション」山本量一(編)ISBN:978-4-9904860-3-7 C0040 (科学技術振興機構, 2012)