Backup diff of ry/Publication vs current(No. 10)

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#author("2024-04-09T09:57:20+00:00","mss","mss")
* Publication List[#o17c40ab]

** Publication List of RY [#s9e9cb2f]

- [[ResearcherID: C-2128-2008:http://www.researcherid.com/rid/C-2128-2008]] (Thomson Reuters)
- [[Publons (Web of Science ResearcherID:C-2128-2008):https://www.webofscience.com/wos/author/record/1754809]]

- [[Google Scholar:http://scholar.google.com/citations?user=ZVwSewgAAAAJ]]

- [[Scopus ID: 16416164200:http://www.scopus.com/authid/detail.url?authorId=16416164200]]

- [[ORCID: 0000-0002-8371-2833:http://orcid.org/0000-0002-8371-2833]]

- [[researchmap:https://researchmap.jp/ryo0921]]

*** Refereed Papers [#wee45932]

+ T. Iwashita, T. Kumagai and R. Yamamoto,
A direct numerical simulation method for complex modulus of
particle dispersions,
preprint, http://arxiv.org/abs/0908.4505
//"[[doi>:http://dx.doi.org/]]"
&br;&br;
+ T. Iwashita and R. Yamamoto, 
Direct numerical simulations for non-Newtonian rheology of concentrated particle dispersions,
preprint, http://arxiv.org/abs/0905.0130
//"[[doi>:http://dx.doi.org/]]"
&br;&br;
+ R. Yamamoto, Y. Nakayama, and K. Kim,
Smoothed profile method to simulate colloidal particles 
in complex fluids,
Int. J. Mod. Phys. C, in print. 
//"[[doi>:http://dx.doi.org/]]"
&br;&br;
+ S. Yasuda and R. Yamamoto, 
Rheological properties of polymer melt between rapidly oscillating plates: an application of multiscale modeling, 
EPL, 86, 18002 (2009). 
"[[doi>:http://dx.doi.org/10.1209/0295-5075/86/18002]]"
&br;&br;
+ T. Iwashita, Y. Nakayama, and R. Yamamoto, 
Velocity autocorrelation function of fluctuating particles in incompressible fluids, -Toward direct numerical simulation of particle dispersions-, 
Prog. Theor. Phys. Suppl., 178, 86-91 (2009). 
"[[doi>:http://dx.doi.org/10.1143/PTPS.178.86]]"
&br;&br;
+ T. Iwashita and R. Yamamoto,
Short-time motion of Brownian particles in a shear flow,
Phys. Rev. E, 79, 031401 (2009). 
"[[doi>:http://dx.doi.org/10.1103/PhysRevE.79.031401]]"
&br;&br;
+ S. Yasuda and R. Yamamoto,
A Model for Hybrid Simulations of Molecular Dynamics and Computational Fluid Dynamics,
Phys. Fluids, 20, 113101 (2008). 
"[[doi>:http://dx.doi.org/10.1063/1.3003218]]"
&br;&br;
+ Y. Nakayama, K. Kim and R. Yamamoto,
Smoothed Profile Method for Direct Simulation of Flowing (Charged) Colloids in Solvents,
AES Technical Reviews　Part A: International Journal of Nano and Advanced Engineering Materials, 1, 21-28 (2008). 
//"[[doi>:http://dx.doi.org/]]"
&br;&br;
+ R. Yamamoto, K. Kim, Y. Nakayama, K. Miyazaki, and D.R. Reichman,
On the role of hydrodynamic interactions in colloidal gelation,
J. Phys. Soc. Jpn., 77, 084804 (2008). 
"[[doi>:http://dx.doi.org/10.1143/JPSJ.77.084804]]"
&br;&br;
+ T. Iwashita, Y. Nakayama, and R. Yamamoto,
A numerical model for Brownian particles fluctuating in incompressible fluids,
J. Phys. Soc. Jpn., 77, 074007, (2008). 
"[[doi>:http://dx.doi.org/10.1143/JPSJ.77.074007]]"
&br;&br;
+ Y. Nakayama, K. Kim and R. Yamamoto,
Simulating (electro) hydrodynamic effects in colloidal dispersions: smoothed profile method,
Eur. Phys. J. E, 26, 361-368 (2008). 
"[[doi>:http://dx.doi.org/10.1140/epje/i2007-10332-y]]"
&br;&br;
+ R. Yamamoto, K. Kim, and Y. Nakayama,
Strict simulations of non-equilibrium dynamics of colloids,
Colloids and Surfaces A: Physicochemical and Engineering Aspects, 311, 42-47 (2007). 
"[[doi>:http://dx.doi.org/10.1016/j.colsurfa.2007.08.041]]"
&br;&br;
+ R. Yamamoto, K. Kim, and Y. Nakayama,
KAPSEL: Kyoto Advanced Particle Simulator for ELectrohydrodynamics: Toward Direct Numerical Simulations of Colloidal Dispersions,
KONA, 24, 167-182 (2006). 
"[[Link:http://www.kona.or.jp/search/24_167.pdf]]"
&br;&br;
+ K. Kim, Y. Nakayama, and R. Yamamoto,
Direct Numerical Simulations of Electrophoresis,
Phys. Rev. Lett., 96, 208302 (2006). 
"[[doi>:http://dx.doi.org/10.1103/PhysRevLett.96.208302]]"
&br;&br;
+ K. Kim, Y. Nakayama, and R. Yamamoto,
Simulating electrohydrodynamics in charged colloidal dispersions: A smoothed profile method,
AIP Conference Proceedings, 832, 251-256 (2006). 
"[[doi>:http://dx.doi.org/10.1063/1.2204501]]"
&br;&br;
+ Y. Nakayama, K. Kim, and R. Yamamoto,
Hydrodynamic effects in colloidal dispersions studied by a new efficient direct simulation,
AIP Conference Proceedings, 832, 245-250 (2006). 
"[[doi>:http://dx.doi.org/10.1063/1.2204500]]"
&br;&br;
+ K. Kim and R. Yamamoto,
Efficient simulations of charged colloidal dispersions: A density functional approach,
Macromol. Theory Simul., 14, 278-284 (2005). 
"[[doi>:http://dx.doi.org/10.1002/mats.200400068]]"
&br;&br;
+ Y. Nakayama and R. Yamamoto,
A Simulation Method to Resolve Hydrodynamic Interactions in Colloidal Dispersions,
Phys. Rev. E, 71, 036707 (2005). 
"[[doi>:http://dx.doi.org/10.1103/PhysRevE.71.036707]]"
&br;&br;
+ R. Yamamoto, Y. Nakayama, and K. Kim,
A Method to Resolve Hydrodynamic Interactions in Colloidal Dispersions,
Computer Physics Communications, 169, 301-304 (2005). 
"[[doi>:http://dx.doi.org/10.1016/j.cpc.2005.03.067]]"
&br;&br;
+ K. Kim, Y. Nakayama, and R. Yamamoto,
A Smoothed Profile Method for Simulating Charged Colloidal Dispersions,
Computer Physics Communications, 169, 104-106 (2005). 
"[[doi>:http://dx.doi.org/10.1016/j.cpc.2005.03.024]]"
&br;&br;
+ T. Hamanaka, R. Yamamoto, and A. Onuki,
Molecular Dynamics Simulation of Heat-Conducting Near-Critical Fluids,
Phys. Rev. E, 71, 011507 (2005). 
"[[doi>:http://dx.doi.org/10.1103/PhysRevE.71.011507]]"
&br;&br;
+ R. Yamamoto and A. Onuki,
Entanglements in a quiescent and sheared polymer melt,
Phys. Rev. E, 70, 041801 (2004). 
''Future''

//:''000''| Mitsusuke Tarama, Kenji Mori, and Ryoichi Yamamoto,&br;
//Mechano-chemical subcellular-element model of crawling cells,&br;
//https://arxiv.org/abs/1905.03001
//[http://dx.doi.org/]

//:''000''| Norihiro Oyama, John J. Molina, and Ryoichi Yamamoto,&br;
//Hydrodynamic alignment of microswimmers in pipes,&br;
//https://arxiv.org/abs/1612.00135
//[http://dx.doi.org/]


''2023''

:''130''| T. Kobayashi, G. Jung, Y. Matsuoka, Y. Nakayama, J. J. Molina, and R. Yamamoto,&br;
Direct numerical simulations of a microswimmer in a viscoelastic fluid,&br;
''Soft Matter'' 19, 7109&#8211;7121 (2023).
[http://dx.doi.org/10.1039/D3SM00600J]

:''129''| S. K. Schnyder, J. J. Molina, R. Yamamoto, and M. S. Turner,&br;
Rational social distancing policy during epidemics with limited healthcare capacity,&br;
''PLOS Comput. Biol.'' 19, e1011533 (2023).
[http://dx.doi.org/10.1371/journal.pcbi.1011533]

:''128''| S. K. Schnyder, J. J. Molina, R. Yamamoto, and M. S. Turner,&br;
Rational social distancing in epidemics with uncertain vaccination timing,&br;
''PLoS One'' 18, e0288963 (2023).
[http://dx.doi.org/10.1371/journal.pone.0288963]

:''127''| K. Sankaewtong, J. J. Molina, M. S. Turner, and R. Yamamoto,&br;
Learning to swim efficiently in a nonuniform flow field,&br;
''Phys. Rev. E'' 107, 065102 (2023).
[http://dx.doi.org/10.1103/PhysRevE.107.065102]

:''126''| C. Feng, J. J. Molina, and R. Yamamoto,&br;
Dynamics of a Model Microswimmer in the Vicinity of a Liquid Droplet,&br;
''J. Phys. Soc. Japan'' 92, 074802 (2023).
[http://dx.doi.org/10.7566/JPSJ.92.074802]

:''125''| C. Feng, J. J. Molina, M. S. Turner, and R. Yamamoto,&br;
Dynamics of microswimmers near a liquid&#8211;liquid interface with viscosity difference,&br;
''Phys. Fluids'' 35, 051903 (2023).
[http://dx.doi.org/10.1063/5.0148008]

:''124''| S. Imamura, K. Sawaki, J. J. Molina, M. S. Turner, and R. Yamamoto,&br;
Collective Motion of Quincke Rollers with Fully Resolved Hydrodynamics,&br;
''Adv. Theory Simulations'' 6, 2200683 (2023).
[http://dx.doi.org/10.1002/adts.202200683]

:''123''| M. Uzair, M. D. Qasim, M. A. Bhatti, A. A. Zaidi, J. J. Molina, R. Yamamoto, A. Hamid,&br;
Direct numerical simulations of isolated rigid particles; Validation of smooth profile method,&br;
''Powder Technol.'' 418, 118280 (2023).
[http://dx.doi.org/10.1016/j.powtec.2023.118280]

''2022''

:''122''| J. Li, S. K. Schnyder, M. S. Turner, and R. Yamamoto,&br;
Competition between cell types under cell cycle regulation with apoptosis,&br;
''Phys. Rev. Res.'' 4, 033156 (2022).
[http://dx.doi.org/10.1103/PhysRevResearch.4.033156]

:''121''| K. Kanayama, T. Hoshino, and R. Yamamoto,&br;
Relation between dynamic heterogeneities observed in scattering experiments and four-body correlations,&br;
''Phys. Rev. Res.'' 4, L022006 (2022).
[http://dx.doi.org/10.1103/PhysRevResearch.4.L022006]

:''120''| M. Tarama, K. Mori, and R. Yamamoto,&br;
Mechanochemical subcellular-element model of crawling cells,&br;
''Front. Cell Dev. Biol.'' 10, 118280 (2022).
[http://dx.doi.org/10.3389/fcell.2022.1046053]

:''119''| C. Feng, J. J. Molina, M. S. Turner, and R. Yamamoto,&br;
Dynamics of microswimmers near a soft penetrable interface,&br;
''Phys. Rev. Res.'' 4, 043202 (2022).
[http://dx.doi.org/10.1103/PhysRevResearch.4.043202]

''2021''

:''118''| J. Li, S. K. Schnyder, M. S. Turner, and R. Yamamoto,&br;
Role of the Cell Cycle in Collective Cell Dynamics,&br;
''Phys. Rev. X'' 11, 031025 (2021).
[http://dx.doi.org/10.1103/PhysRevX.11.031025]

:''117''| R. Yamamoto, J. J. Molina, and Y. Nakayama,&br;
Smoothed profile method for direct numerical simulations of hydrodynamically interacting particles,&br;
''Soft Matter'' 16, 4226&#8211;4253 (2021).
[http://dx.doi.org/10.1039/D0SM02210A]

''2020''

:''116''| Federico Fadda, John Jairo Molina, and Ryoichi Yamamoto,&br;
Dynamics of a chiral swimmer sedimenting on a flat plate,&br;
''Phys. Rev. E'' 101, 052608 (2020).
[http://dx.doi.org/10.1103/PhysRevE.101.052608]

:''115''| Simon K. Schnyder, John J. Molina, and Ryoichi Yamamoto,&br;
Control of cell colony growth by contact inhibition,&br;
''Scientific Report'' 10, 6713-6726 (2020).
[http://dx.doi.org/10.1038/s41598-020-62913-z]

:''114''| Gregory Lecrivain, Taisa B. Pacheco, Ryoichi Yamamoto, Uwe Hampel, and Takashi Taniguchi,&br;
Eulerian/Lagrangian formulation for the elasto-capillary deformation of a flexible fibre,&br;
''J. Comput. Phys.'' 409, 109324-109339 (2020).
[http://dx.doi.org/10.1016/j.jcp.2020.109324]

:''113''| N. Arai, S. Watanabe, M. T. Miyahara, R. Yamamoto, U. Hampel, and G. Lecrivain,&br;
Direct observation of the attachment behavior of hydrophobic colloidal particles onto a bubble surface,&br;
''Soft Matter'' 16, 695&#8211;702 (2020).
[http://dx.doi.org/10.1039/C9SM01787A]

:''112''| A. Hamid, A.B. Arshad, S. Mehdi, M.D. Qasim, A. Ullah, J.J. Molina, R. Yamamoto,&br;
A numerical study of sedimentation of rod like particles using smooth profile method,&br;
''Int. J. Multiph. Flow'' 127, 103263-103273 (2020).
[http://dx.doi.org/10.1016/j.ijmultiphaseflow.2020.103263]

''2019''

:''111''| Matteo Campoa, Simon K. Schnyderc, John J. Molinad, Thomas Speck and Ryoichi Yamamoto,&br;
Spontaneous Spatiotemporal Ordering of Shape Oscillations Enhances Cell Migration,&br;
''Soft Matter'' 15, 4939-4946 (2019).
[http://dx.doi.org/10.1039/C9SM00526A]

:''110''| John J. Molina, Ryoichi Yamamoto,&br;
Mechanosensitivity of Crawling Cells under Periodically Stretching Substrates,&br;
''Soft Matter'' 15, 683 (2019).
[http://dx.doi.org/10.1039/C8SM01903G]

''2018''

:''109''| Gregory Lecrivain, Yuki Kotani, Ryoichi Yamamoto, Uwe Hampel, and Takashi Taniguchi,&br;
A di&#64256;use interface model to simulate the rise of a &#64258;uid droplet across a cloud of particles,&br;
''Physical Review Fluids'' 3, 094002 (2018).
[http://dx.doi.org/10.1103/PhysRevFluids.3.094002]

:''108''| Chunyu Shih, John J. Molina, and Ryoichi Yamamoto,&br;
Field-induced dipolar attraction between like-charged colloids,&br;
''Soft Matter'' 12, 914-924 (2018).
[http://dx.doi.org/10.1039/C8SM00395E]

:''107''| M. Shakeel, A. Hamid, A. Ullah, J. J. Molina, and R. Yamamoto,&br;
Direct Numerical Simulations of Correlated Settling particles,&br;
''J. Phys. Soc. Japan'' 87, 064402 (2018).
[http://dx.doi.org/10.7566/JPSJ.87.064402]

:''106''|Mitsusuke Tarama and Ryoichi Yamamoto,&br;
Mechanics of cell crawling by means of force-free cyclic motion,&br;
''J. Phys. Soc. Japan'' 87, 044803 (2018).
[http://dx.doi.org/10.7566/JPSJ.87.044803]

:''105''| Norihiro Oyama, Kosuke Teshigawara, John J. Molina, Ryoichi Yamamoto, and Takashi Taniguchi,&br;
Reynolds-number-dependent dynamical transitions on hydrodynamic synchronization modes of externally driven colloids,&br;
''Phys. Rev. E'' 97, 032611 (2018).
[http://dx.doi.org/10.1103/PhysRevE.97.032611]

''2017''

:''104''| Norihiro Oyama, John J. Molina, and Ryoichi Yamamoto,&br;
Do hydrodynamically assisted binary collisions lead to orientational ordering of microswimmers?&br;
''Eur. Phys. J. E'' 40, 95 (2017).
[http://dx.doi.org/10.1140/epje/i2017-11586-4]

:''103''| Norihiro Oyama, John J. Molina, and Ryoichi Yamamoto,&br;
Simulations of model micro-swimmers with fully resolved hydrodynamics,&br;
''J. Phys. Soc. Jpn.,'' 86, 101008 (2017).
[http://dx.doi.org/10.7566/JPSJ.86.101008]

:''102''| Gregory Lecrivain, Ryoichi Yamamoto, Uwe Hampel, and Takashi Taniguchi,&br;
Direct numerical simulation of an arbitrarily shaped particle at a fluidic interface,&br;
''Phys. Rev. E'' 95, 063107 (2017).
[http://dx.doi.org/10.1103/PhysRevE.95.063107]

:''101''| Samia Mehdi, Adnan Hamid, Atta Ullah, and Ryoichi Yamamoto,&br;
Microstructure of Rod like Sedimenting Particles: Direct Numerical Simulations,&br;
''14th International Bhurban Conference on Applied Sciences and Technology (IBCAST)'', 622-626 (2017). 
[http://dx.doi.org/10.1109/IBCAST.2017.7868115]

:''100''| Simon K. Schnyder, Yuki Tanaka, John J. Molina, and Ryoichi Yamamoto,&br;
Collective motion of cells crawling on a substrate: roles of cell shape and contact inhibition, &br;
''Scientific Reports'' 7, 5163 (2017).
[http://dx.doi.org/10.1038/s41598-017-05321-0]

''2016''

:''99''| Gregory Lecrivain, Ryoichi Yamamoto, Uwe Hampel, and Takashi Taniguchi,&br;
Direct numerical simulation of a single particle attachment on a stationary immersed bubble,&br;
''Phys. Fluids'' 28, 083301 (2016).
[http://dx.doi.org/10.1063/1.4960627]

:''98''| Norihiro Oyama, John J. Molina, Ryoichi Yamamoto,&br;
Purely hydrodynamic origin for swarming of swimming particles,&br;
''Phys. Rev. E'' 93, 043114 (2016).
[http://dx.doi.org/10.1103/PhysRevE.93.043114]

:''97''| John J. Molina, Kotaro Otomura, Hayato Shiba, Hideki Kobayashi, Masaki Sano, and Ryoichi Yamamoto,&br;
Rheological evaluation of colloidal dispersions using the smooth profile method: formulation and applications,&br;
''J. Fluid Mech.'' 792, 590-619 (2016).
[http://dx.doi.org/10.1017/jfm.2016.78]

:''96''| Shugo Yasuda and Ryoichi Yamamoto,&br;
Synchronized molecular-dynamics simulation for the thermal lubrication of a polymeric liquid between parallel plates,&br;
''Computers and Fluids'' 124, 185-189 (2016).
[http://dx.doi.org/10.1016/j.compfluid.2015.05.018]

''2015''

:''95''| Chunyu Shih, John J. Molina, and Ryoichi Yamamoto,&br;
Dynamic polarization of a charged colloid in an oscillating electric field,&br;
''Molec. Phys.'' 113, 2511-2522 (2015).
[http://dx.doi.org/10.1080/00268976.2015.1059510]

:''94''| Andrew J. Dunleavy, Karoline Wiesner, Ryoichi Yamamoto, and C. Patrick Royall,&br;
Mutual information reveals multiple structural relaxation mechanisms in a model glassformer,&br;
''Nature Communications'' 6, 6089 (2015).
[http://dx.doi.org/10.1038/ncomms7089]

:''93''| Gregory Lecrivain, Giacomo Petrucci, Uwe Hampel and Ryoichi Yamamoto,&br;
Attachment of solid elongated particles on the surface of a stationary gas bubble,&br;
''Int. J. Multiphase Flow'' 71, 83-93 (2015).
[http://dx.doi.org/10.1016/j.ijmultiphaseflow.2015.01.002]

:''92''| Shugo Yasuda and Ryoichi Yamamoto,&br;
Multiscale simulation for thermo-hydrodynamic lubrication of a polymeric liquid between parallel plate,&br;
''Molec. Simulation'' 41, 1002-1005 (2015).
[http://dx.doi.org/10.1080/08927022.2014.951639]

:''91''| Adnan Hamid, John J. Molina, and Ryoichi Yamamoto,&br;
Simulation studies of microstructure of colloids in sedimentation,&br;
''Molec. Simulation'' 41, 968-973 (2015).
[http://dx.doi.org/10.1080/08927022.2014.929124]

''2014''

:''90''| Shugo Yasuda and Ryoichi Yamamoto,&br;
Synchronized molecular dynamics simulation via macroscopic heat and momentum
transfer: an application to polymer lubrication,&br;
''Phys. Rev. X'' 4, 041011 (2014).
[http://dx.doi.org/10.1103/PhysRevX.4.041011]

:''89''| Adnan Hamid, John J. Molina, and Ryoichi Yamamoto,&br;
Direct Numerical Simulations of Sedimenting Spherical Particles at Finite Reynolds Number,&br;
''RSC Advances'' 4, 53681-53693 (2014).
[http://dx.doi.org/10.1039/C4RA11025K]

:''88''| Chunyu Shih and Ryoichi Yamamoto,&br;
Dynamic Electrophoresis of Charged Colloids in an Alternating Electric Field,&br;
''Phys. Rev. E'' 89, 062317 (2014).
[http://dx.doi.org/10.1103/PhysRevE.89.062317]

:''87''| John J. Molina and Ryoichi Yamamoto,&br;
Diffusion of colloidal particles in swimming suspensions,&br;
''Molec. Phys.'' 112, 1389-1397 (2014).
[http://dx.doi.org/10.1080/00268976.2014.903004]

''2013''

:''86''| John J. Molina and Ryoichi Yamamoto,&br;
Direct numerical simulations of rigid body dispersions. I. Mobility/Friction tensors of assemblies of spheres,&br;
''J. Chem. Phys.'' 139, 234105 (2013).
[http://dx.doi.org/10.1063/1.4844115]

:''85''| Adnan Hamid, John J. Molina, and Ryoichi Yamamoto,&br;
Sedimentation of non-Brownian spheres at high volume fraction,&br;
''Soft Matter'' 9, 10056-10068 (2013).
[http://dx.doi.org/10.1039/c3sm50748c]

:''84''| Rei Tatsumi and Ryoichi Yamamoto,&br;
Velocity relaxation of a particle in a confined compressible fluid,&br;
''J. Chem. Phys.'' 138, 184905 (2013).
[http://dx.doi.org/10.1063/1.4804186]

:''83''| John J. Molina, Yasuya Nakayama, and Ryoichi Yamamoto,&br;
Hydrodynamic interactions of self-propelled swimmers,&br;
''Soft Matter'' 9, 4923-4936 (2013).
[http://dx.doi.org/10.1039/c3sm00140g]

:''82''| Rei Tatsumi and Ryoichi Yamamoto,&br;
Propagation of hydrodynamic interactions between particles in a compressible fluid,&br;
''Phys. Fluids'' 25, 046101 (2013).
[http://dx.doi.org/10.1063/1.4802038]

:''81''| Hideyuki Mizuno and Ryoichi Yamamoto,&br;
General constitutive model for supercooled liquids: Anomalous transverse wave propagation,&br;
''Phys. Rev. Lett.'' 110, 095901 (2013).
[http://dx.doi.org/10.1103/PhysRevLett.110.095901]

:''80''| Adnan Hamid and Ryoichi Yamamoto,&br;
Direct numerical simulations of anisotropic diffusion of spherical particles in sedimentation,&br;
''Phys. Rev. E'' 87, 022310 (2013).
[http://dx.doi.org/10.1103/PhysRevE.87.022310]

:''79''| Adnan Hamid and Ryoichi Yamamoto,&br;
Sedimentation at Finite Peclet Number: Direct Numerical Simulation,&br;
''AIP Conf. Proc.'' 1518, 444-447 (2013).
[http://dx.doi.org/10.1063/1.4794612]

:''78''| Adnan Hamid and Ryoichi Yamamoto,&br;
Anisotropic velocity fluctuations and particle diffusion in sedimentation,&br;
''J. Phys. Soc. Jpn.'' 82, 024004 (2013).
[http://dx.doi.org/10.7566/JPSJ.82.024004]

:''77''| Takahiro Murashima, Shugo Yasuda, Takashi Taniguchi, and Ryoichi Yamamoto,&br;
Multiscale modeling for polymeric flow: Particle-fluid bridging scale methods,&br;
''J. Phys. Soc. Jpn.'' 82, 012001 (2013).
[http://dx.doi.org/10.7566/JPSJ.82.012001]

''2012''

:''76''| Yuki Matsuoka, Tomonori Fukasawa, Ko Higashitani, and Ryoichi Yamamoto,&br;
Effect of hydrodynamic interactions on rapid Brownian coagulation of colloidal dispersions,&br;
''Phys. Rev. E'' 86, 051403 (2012).
[http://dx.doi.org/10.1103/PhysRevE.86.051403]

:''75''| Yuki Matsuoka, Hideyuki Mizuno, and Ryoichi Yamamoto,&br;
Acoustic wave propagation through a supercooled liquid: A normal mode analysis,&br;
''J. Phys. Soc. Jpn.'' 81, 124602 (2012).
[http://dx.doi.org/10.1143/JPSJ.81.124602]

:''74''| Yukitaka Ishimoto, Takahiro Murashima, Takashi Taniguchi, and Ryoichi Yamamoto,&br;
Two-dimensional lattice liquid models,&br;
''Phys. Rev. E'' 86, 031124 (2012).
[http://dx.doi.org/10.1103/PhysRevE.86.031124]

:''73''| Rei Tatsumi and Ryoichi Yamamoto, &br;
Direct numerical simulation of dispersed particles in a compressible fluid,&br;
''Phys. Rev. E'' 85, 066704 (2012).
[http://dx.doi.org/10.1103/PhysRevE.85.066704]

:''72''| Hideyuki Mizuno and Ryoichi Yamamoto, &br;
Mechanical Responses and Stress Fluctuations of a Strongly Sheared Supercooled Liquid,&br;
''Eur. Phys. J. E'' 35, 29 (2012). 
[http://dx.doi.org/10.1140/epje/i2012-12029-6]

:''71''| Hideyuki Mizuno and Ryoichi Yamamoto, &br;
Dynamical heterogeneity in a highly supercooled liquid under a sheared situation,&br;
''J. Chem. Phys.'' 136, 084505 (2012). 
[http://dx.doi.org/10.1063/1.3688227]

:''70''| Masayuki Uranagase, Takashi Taniguchi, and Ryoichi Yamamoto,&br;
Electrostatic potential around a charged colloidal particle in an electrolyte solution with ion strong coupling,&br;
''J. Phys. Soc. Jpn.'' 81 024803 (2012).
[http://dx.doi.org/10.1143/JPSJ.81.024803]

''2011''

:''69''| Hideki Kobayashi and Ryoichi Yamamoto, &br;
Re-entrant transition in the shear viscosity of dilute rigid rod dispersions,&br;
''Phys. Rev. E'' 84 051404 (2011).
[http://dx.doi.org/10.1103/PhysRevE.84.051404]

:''68''| Hideyuki Mizuno and Ryoichi Yamamoto,&br;
Dynamical heterogeneity in a highly supercooled liquid: Its correlation length, intensity, and lifetime,&br;
''Phys. Rev. E'' 84, 011506 (2011).
[http://dx.doi.org/10.1103/PhysRevE.84.011506]

:''67''| Shugo Yasuda and Ryoichi Yamamoto,&br;
Dynamic rheology of a supercooled polymer melt in non-uniform oscillating flows in rapidly oscillating plates,&br;
''Phys. Rev. E'' 84, 031501 (2011).
[http://dx.doi.org/10.1103/PhysRevE.84.031501]

:''66''| Hideki Kobayashi and Ryoichi Yamamoto,&br;
Implementation of Lees-Edwards periodic boundary conditions for direct numerical simulations of particle dispersions under shear flow,&br;
''J. Chem. Phys.'' 134, 064110 (2011).
[http://dx.doi.org/10.1063/1.3537974]

:''65''| Saeed Jafari, Ryoichi Yamamoto, and Mohamad Rahnama,&br;
Lattice-Boltzmann method combined with smoothed-profile method for particulate suspensions, &br;
''Phys. Rev. E'' 83, 026702 (2011).
[http://dx.doi.org/10.1103/PhysRevE.83.026702]

''2010''

:''64''| Hideyuki Mizuno and Ryoichi Yamamoto,&br;
Lifetime of dynamical heterogeneity in a highly supercooled liquid,&br;
''Phys. Rev. E'' 82, 030501 (2010).
[http://dx.doi.org/10.1103/PhysRevE.82.030501]

:''63''| Takuya Iwashita, Takuya Kumagai and Ryoichi Yamamoto,&br;
A direct numerical simulation method for complex modulus of particle dispersions,&br;
''Eur. Phys. J. E'' 32, 357-363 (2010). 
[http://dx.doi.org/10.1140/epje/i2010-10638-7]

:''62''| Hideki Kobayashi and Ryoichi Yamamoto,&br;
Tumbling motion of a single chain in shear flow: a crossover from Brownian to non-Brownian behavior,&br;
''Phys. Rev. E'' 81, 041807, (2010).
[http://dx.doi.org/10.1103/PhysRevE.81.041807]

:''61''| Yasuya Nakayama, Kang Kim, and Ryoichi Yamamoto, &br;
Direct simulation of flowing colloidal dispersions by smoothed profile method,&br;
''Advanced Powder Technology'' 21, 206&#8211;211 (2010).
[http://dx.doi.org/10.1016/j.apt.2009.11.011]

:''60''| Shugo Yasuda and Ryoichi Yamamoto, &br;
Multiscale modeling and simulation for polymer melt flows between parallel plates,&br;
''Phys. Rev. E'' 81, 036308 (2010).
[http://dx.doi.org/10.1103/PhysRevE.81.036308]

''2009''

:''59''| Takuya Iwashita and Ryoichi Yamamoto, &br;
Direct numerical simulations for non-Newtonian rheology of concentrated particle dispersions,&br;
''Phys. Rev. E'' 80, 061402 (2009).
//preprint, http://arxiv.org/abs/0905.0130
[http://dx.doi.org/10.1103/PhysRevE.80.061402]

:''58''| Ryoichi Yamamoto, Yasuya Nakayama, and Kang Kim,&br;
Smoothed profile method to simulate colloidal particles in complex fluids,&br;
''Int. J. Mod. Phys. C'' 20, 1457-1465 (2009). 
[http://dx.doi.org/10.1142/S0129183109014515]

:''57''| Shugo Yasuda and Ryoichi Yamamoto, &br;
Rheological properties of polymer melt between rapidly oscillating plates: an application of multiscale modeling,&br;
''EPL'' 86, 18002 (2009). 
[http://dx.doi.org/10.1209/0295-5075/86/18002]

:''56''| Takuya Iwashita, Yasuya Nakayama, and Ryoichi Yamamoto, &br;
Velocity autocorrelation function of fluctuating particles in incompressible fluids, -Toward direct numerical simulation of particle dispersions-,&br;
''Prog. Theor. Phys. Suppl.'' 178, 86-91 (2009). 
[http://dx.doi.org/10.1143/PTPS.178.86]

:''55''| Takuya Iwashita and Ryoichi Yamamoto,&br;
Short-time motion of Brownian particles in a shear flow,&br;
''Phys. Rev. E'' 79, 031401 (2009). 
[http://dx.doi.org/10.1103/PhysRevE.79.031401]

''2008''

:''54''| Shugo Yasuda and Ryoichi Yamamoto,&br;
A Model for Hybrid Simulations of Molecular Dynamics and Computational Fluid Dynamics,&br;
''Phys. Fluids'' 20, 113101 (2008). 
[http://dx.doi.org/10.1063/1.3003218]

:''53''| Ryoichi Yamamoto, Kang Kim, Yasuya Nakayama, K. Miyazaki, and D.R. Reichman,&br;
On the role of hydrodynamic interactions in colloidal gelation,&br;
''J. Phys. Soc. Jpn.'' 77, 084804 (2008). 
[http://dx.doi.org/10.1143/JPSJ.77.084804]

:''52''| Takuya Iwashita, Yasuya Nakayama, and Ryoichi Yamamoto,&br;
A numerical model for Brownian particles fluctuating in incompressible fluids,&br;
''J. Phys. Soc. Jpn.'' 77, 074007, (2008). 
[http://dx.doi.org/10.1143/JPSJ.77.074007]

:''51''| Yasuya Nakayama, Kang Kim and Ryoichi Yamamoto,&br;
Simulating (electro) hydrodynamic effects in colloidal dispersions: smoothed profile method,&br;
''Eur. Phys. J. E'' 26, 361-368 (2008). 
[http://dx.doi.org/10.1140/epje/i2007-10332-y]

''2007''

:''50''| Ryoichi Yamamoto, Kang Kim, and Yasuya Nakayama,&br;
Strict simulations of non-equilibrium dynamics of colloids,&br;
''Colloids and Surfaces A'': Physicochemical and Engineering Aspects, 311, 42-47 (2007). 
[http://dx.doi.org/10.1016/j.colsurfa.2007.08.041]

''2006''

:''49''| Ryoichi Yamamoto, Kang Kim, and Yasuya Nakayama,&br;
KAPSEL: Kyoto Advanced Particle Simulator for ELectrohydrodynamics: Toward Direct Numerical Simulations of Colloidal Dispersions,&br;
''KONA'' 24, 167-182 (2006). 
[http://dx.doi.org/10.14356/kona.2006019]

:''48''| Kang Kim, Yasuya Nakayama, and Ryoichi Yamamoto,&br;
Direct Numerical Simulations of Electrophoresis,&br;
''Phys. Rev. Lett.'' 96, 208302 (2006). 
[http://dx.doi.org/10.1103/PhysRevLett.96.208302]

:''47''| Kang Kim, Yasuya Nakayama, and Ryoichi Yamamoto,&br;
Simulating electrohydrodynamics in charged colloidal dispersions: A smoothed profile method,&br;
''AIP Conf. Proc.'' 832, 251-256 (2006). 
[http://dx.doi.org/10.1063/1.2204501]

:''46''| Yasuya Nakayama, Kang Kim, and Ryoichi Yamamoto,&br;
Hydrodynamic effects in colloidal dispersions studied by a new efficient direct simulation,&br;
''AIP Conf. Proc.'' 832, 245-250 (2006). 
[http://dx.doi.org/10.1063/1.2204500]

:''45''| Ryoichi Yamamoto,&br;
Supercooled Liquids under Shear: Computational Approach,&br;
''Computer Simulation Studies in Condensed Matter Physics XVI''; Ed. D.P. Landau, S.P Lewis, and H.B. Schuttler (Springer, Berlin, 2006) p.61-73. 
//"[[ISBN-13: 978-3540265641:http://www.amazon.com/Computer-Simulation-Studies-Condensed-Matter-Physics/dp/3540265643]]"
[http://dx.doi.org/10.1007/3-540-26565-1_6]

''2005''

:''44''| Kang Kim and Ryoichi Yamamoto,&br;
Efficient simulations of charged colloidal dispersions: A density functional approach,&br;
''Macromol. Theory Simul.'' 14, 278-284 (2005). 
[http://dx.doi.org/10.1002/mats.200400068]

:''43''| Yasuya Nakayama and Ryoichi Yamamoto,&br;
A Simulation Method to Resolve Hydrodynamic Interactions in Colloidal Dispersions,&br;
''Phys. Rev. E'' 71, 036707 (2005). 
[http://dx.doi.org/10.1103/PhysRevE.71.036707]

:''42''| Ryoichi Yamamoto, Yasuya Nakayama, and Kang Kim,&br;
A Method to Resolve Hydrodynamic Interactions in Colloidal Dispersions,&br;
''Comp. Phys. Comm.'' 169, 301-304 (2005). 
[http://dx.doi.org/10.1016/j.cpc.2005.03.067]

:''41''| Kang Kim, Yasuya Nakayama, and Ryoichi Yamamoto,&br;
A Smoothed Profile Method for Simulating Charged Colloidal Dispersions,&br;
''Comp. Phys. Comm.'' 169, 104-106 (2005). 
[http://dx.doi.org/10.1016/j.cpc.2005.03.024]

:''40''| Toshiyuki Hamanaka, Ryoichi Yamamoto, and Akira Onuki,&br;
Molecular Dynamics Simulation of Heat-Conducting Near-Critical Fluids,&br;
''Phys. Rev. E'' 71, 011507 (2005). 
[http://dx.doi.org/10.1103/PhysRevE.71.011507]

''2004''

:''39''| Ryoichi Yamamoto and Akira Onuki,&br;
Entanglements in a quiescent and sheared polymer melt,&br;
''Phys. Rev. E'' 70, 041801 (2004). 
also selected for the October 15, 2004 issue of Virtual Journal of Biological Physics Research.
"[[doi>:http://dx.doi.org/10.1103/PhysRevE.70.041801]]"
[http://dx.doi.org/10.1103/PhysRevE.70.041801]

:''38''| Kunimasa Miyazaki, David R. Reichman, and Ryoichi Yamamoto,&br;
Supercooled Liquids under Shear: Theory and Simulation,&br;
''Phys. Rev. E'' 70, 011501 (2004). 
[http://dx.doi.org/10.1103/PhysRevE.70.011501]

:''37''| Ryoichi Yamamoto, Yasuya Nakayama, and Kang Kim,&br;
A Smooth Interface Method for Simulating Colloidal Dispersions,&br;
''J. Phys.; Condens. Matt.'' 16, S1945-S1955 (2004). 
[http://dx.doi.org/10.1088/0953-8984/16/19/007]

:''36''| Kunimasa Miyazaki, Ryoichi Yamamoto, and David R. Reichman,&br;
Supercooled Liquids under Shear: A Mode-Coupling Approach,&br;
''AIP Conf. Proc.'' 708, 635-638. (2004). 
[http://dx.doi.org/10.1063/1.1764242]

:''35''| Ryoichi Yamamoto, Kunimasa Miyazaki, and David R. Reichman,&br;
Supercooled Liquids under Shear: Computational Approach,&br;
''AIP Conf. Proc.'' 708, 717-718 (2004). 
[http://dx.doi.org/10.1063/1.1764277]

''2002''

:''34''| Ryoichi Yamamoto and Akira Onuki,&br;
Dynamics and Rheology of a supercooled polymer melt in shear flow,&br;
''J. Chem. Phys.'' 117 2359-2367 (2002). 
[http://dx.doi.org/10.1063/1.1488589]

''2001''

:''33''| Ryoichi Yamamoto,&br;
Simulating particle dispersions in nematic liquid-crystal solvents,&br;
''Phys. Rev. Lett.'' 87, 075502 (2001). 
[http://dx.doi.org/10.1103/PhysRevLett.87.075502]

:''32''| Walter Kob, C. Brangian, T. Stuehn, and Ryoichi Yamamoto,&br;
Equilibrating glassy systems with parallel tempering,&br;
''Computer Simulation Studies in Condensed Matter Physics XIII''; Ed. D.P. Landau, S.P Lewis, and H.B. Schuttler (Springer, Berlin, 2001) p.153-166. 
//"[[ISBN:3540411909:http://www.reviewscout.com/3540411909]]"
[http://dx.doi.org/10.1007/978-3-642-56577-9_18]

''2000''

:''31''| Ryoichi Yamamoto and Kang Kim,&br;
Heterogeneity and finite size effects in the dynamics of supercooled liquids,&br;
''J. Phys. IV France'' 10, 15-20 (2000). 
[http://dx.doi.org/10.1051/jp4:2000703]

:''30''| Ryoichi Yamamoto and Akira Onuki,&br;
Dynamics of Highly Supercooled Liquids far from Equilibrium,&br;
''J. Phys.; Cond. Matt.'' 12, 6323-6334 (2000). 
[http://dx.doi.org/10.1088/0953-8984/12/29/304]

:''29''| Ryoichi Yamamoto and Walter Kob,&br;
Replica-exchange molecular dynamics simulation for supercooled liquids,&br;
''Phys. Rev. E'' 61, 5473-5476 (2000). 
[http://dx.doi.org/10.1103/PhysRevE.61.5473]

:''28''| Ryoichi Yamamoto and Akira Onuki,&br;
Dynamics and Rheology of a Supercooled Polymer Melt,&br;
''AIP Conf. Proc.'' 519, 151-157 (2000). 
[http://dx.doi.org/10.1063/1.1291531]

:''27''| Ryoichi Yamamoto and Akira Onuki,&br;
Dynamics and Rheology of a Supercooled Polymer Melt,&br;
''Prog. Theor. Phys. Suppl.'' 138, 336-341 (2000). 
[http://dx.doi.org/10.1143/PTPS.138.336]

:''26''| Kang Kim and Ryoichi Yamamoto,&br;
Apparent finite-size effect in the dynamics of supercooled liquids,&br;
''Phys. Rev. E'' 61, R41-R44 (2000). 
[http://dx.doi.org/10.1103/PhysRevE.61.R41]

''1999''

:''25''| Ryoichi Yamamoto and Akira Onuki,&br;
Large scale long-lived heterogeneity in the dynamics of supercooled liquids,&br;
''Int. J. Mod. Phys. C'' 10, 1553-1561 (1999). 
[http://dx.doi.org/10.1142/S0129183199001339]

:''24''| Hideki Tanaka and Ryoichi Yamamoto, Kenichiro Koga, and Xiao C. Zeng,&br;
Can thin disk-like ice clusters be more stable than compact droplet-like ice clusters?&br;
''Chem. Phys. Lett.'' 304, 378-384 (1999). 
[http://dx.doi.org/10.1016/S0009-2614(99)00293-6]

:''23''| Ryoichi Yamamoto and Xiao C. Zeng,&br;
Molecular dynamics study of a phase-separating binary fluid mixture under shear flow,&br;
''Phys. Rev. E'' 59, 3223-3230 (1999). 
[http://dx.doi.org/10.1103/PhysRevE.59.3223]

:''22''| Ryoichi Yamamoto and Akira Onuki,&br;
Dynamics of Highly Supercooled Liquids,&br;
''AIP Conf. Proc.'' 469, 476-483 (1999). 
[http://dx.doi.org/10.1063/1.58529]

''1998''

:''21''| Ryoichi Yamamoto and Akira Onuki,&br;
Heterogeneous Diffusion in Highly Supercooled Liquids,&br;
''Phys. Rev. Lett.'' 81, 4915-4018 (1998). 
[http://dx.doi.org/10.1103/PhysRevLett.81.4915]

:''20''| Ryoichi Yamamoto and Akira Onuki,&br;
Dynamics of Highly Supercooled Liquids; Heterogeneity, Rheology, and Diffusion,&br;
''Phys. Rev. E'' 58, 3515-3529 (1998). 
[http://dx.doi.org/10.1103/PhysRevE.58.3515]

:''19''| Akira Onuki and Ryoichi Yamamoto,&br;
Kinetic Heterogeneities and Nonlinear Rheology of Highly Supercooled Liquids,&br;
''J. Non-cryst. Solid.'' 235-237, 34-40 (1998). 
[http://dx.doi.org/10.1016/S0022-3093(98)00558-4]

''1997''

:''18''| Ryoichi Yamamoto and Akira Onuki,&br;
Nonlinear Rheology of a Highly Supercooled Liquid,&br;
''EPL'' 40, 61-66 (1997). 
[http://dx.doi.org/10.1209/epl/i1997-00419-1]

:''17''| Ryoichi Yamamoto and Akira Onuki,&br;
Kinetic Heterogeneities in a Highly Supercooled Liquid,&br;
''J. Phys. Soc. Jpn.'' 66, 2545-2548 (1997). 
[http://dx.doi.org/10.1143/JPSJ.66.2545]

:''16''| Ryoichi Yamamoto, M. Kano, and Yoji Kawamoto,&br;
Computer simulation of ionic conduction in ZrF_4-BaF_2 glass, II. Normal mode analysis,&br;
''J. Phys.: Cond. Matt.'' 9, 5157-5166 (1997). 
[http://dx.doi.org/10.1088/0953-8984/9/24/014]

:''15''| Akira Onuki, Ryoichi Yamamoto, and Takashi Taniguchi,&br;
Viscoelastic effects and shear-induced phase separation in polymer solutions in polymer solutions,&br;
''Progr. Colloid. Polym. Sci.'' 106, 150-157 (1997). 
[http://dx.doi.org/10.1007/BFb0111049]

:''14''| Akira Onuki, Ryoichi Yamamoto, and Takashi Taniguchi,&br;
Phase separation in polymer solutions induced by shear,&br;
''J. Phys. II France'' 7, 295-304 (1997). 
[http://dx.doi.org/10.1051/jp2:1997126]

''1996''

:''13''| Sigenobu Matsuo, Y. Mizuguchi, Yoshiyuki Tanaka, Hironobu Kubota, and Ryoichi Yamamoto,&br;
Volumetric properties of mixtures of 1,4-dioxane and water at high pressures,&br;
''Int. J. Thermophys.'' 17, 441-454 (1996). 
[http://dx.doi.org/10.1007/BF01443402]

:''12''| Ryoichi Yamamoto and Koichiro Nakanishi,&br;
Computer simulation of vapor-liquid phase separation,&br;
''Molec. Simulation'' 16, 119-126 (1996). 
[http://dx.doi.org/10.1080/08927029608024066]

''1995''

:''11''| Ryoichi Yamamoto, T. Kobayashi, and Yoji Kawamoto,&br;
Computer simulation of ionic conduction in ZrF_4-BaF_2 glass,&br;
''J. Phys.: Cond. Matt.'' 7, 8557-8567 (1995). 
[http://dx.doi.org/10.1088/0953-8984/7/45/011]

:''10''| Masahide Takahashi, Ryoichi Yamamoto, Ryoji Kanno, and Yoji Kawamoto,&br;
Molecular dynamics simulation of Er^{3+}-doped chlorofluorozirconate glasses,&br;
''J. Phys.; Cond. Matt.'' 7, 4583-4592 (1995). 
[http://dx.doi.org/10.1088/0953-8984/7/24/001]

:''9''| Ryoichi Yamamoto, Osamu Kitao, and Koichiro Nakanishi,&br;
Can the van der Waals loop vanish?, Effect of domain size,&br;
''Molec. Phys.'' 84, 757-768 (1995). 
[http://dx.doi.org/10.1080/00268979500100521]

:''8''| Ryoichi Yamamoto, Osamu Kitao, and Koichiro Nakanishi,&br;
Monte Carlo Simulation of Fluoro Propane,&br;
''Fluid Phase Equilibria'' 104, 349-361 (1995). 
[http://dx.doi.org/10.1016/0378-3812(94)02660-S]

:''7''| Ryoichi Yamamoto and Koichiro Nakanishi,&br;
Computer simulation of vapor-liquid phase separation in two- and three-dimensional fluids. II. Domain structure,&br;
''Phys. Rev. B'' 51, 2715-2722 (1995). 
[http://dx.doi.org/10.1103/PhysRevB.51.2715]

''1994''

:''6''| Ryoichi Yamamoto, Hideki Tanaka, Koichiro Nakanishi, and Xiao C. Zeng,&br;
Can the van der Waals loop vanish?, Effect of surface free energy,&br;
''Chem. Phys. Lett.'' 231, 401-406 (1994). 
[http://dx.doi.org/10.1016/0009-2614(94)01268-7]

:''5''| Ryoichi Yamamoto and Koichiro Nakanishi,&br;
Computer simulation of vapor-liquid phase separation in two- and three-dimensional fluids. Growth law of domain size,&br;
''Phys. Rev. B'' 49, 14958-14966 (1994). 
[http://dx.doi.org/10.1103/PhysRevB.49.14958]

:''4''| Ryoichi Yamamoto, Osamu Kitao, and Koichiro Nakanishi,&br;
Intermolecular Interaction of Fluoro Propanes,&br;
''Molec. Simulation'' 12, 383-391 (1994). 
[http://dx.doi.org/10.1080/08927029408023045]

:''3''| Sigenobu Matsuo, Ryoichi Yamamoto, Hironobu Kubota, and Yoshiyuki Tanaka,&br;
Volumetric Properties of Mixtures of Fluoroalcohols and Water at High Pressures,&br;
''Int. J. Thermophys.'' 15, 245-259 (1994). 
[http://dx.doi.org/10.1007/BF01441585]

''1993''

:''2''| Sigenobu Matsuo, Ryoichi Yamamoto, Yoshiyuki Tanaka, and Hironobu Kubota,&br;
Viscosity of Mixtures of Fluoroalcohols and Water at High Pressures,&br;
''Int. J. Thermophys.'' 14, 835-849 (1993).
[http://dx.doi.org/10.1007/BF00502111]

:''1''| Ryoichi Yamamoto, Sigenobu Matsuo, and Yoshiyuki Tanaka,&br;
Thermal Conductivity of Halogenated Ethanes, HFC-134a, HCFC-123 and HCFC-141b,&br;
''Int. J. Thermophys.'' 14, 79-90 (1993).
[http://dx.doi.org/10.1007/BF00522663]

*** Books [#s5fef318]
+ John. J. Molina, Ryoichi Yamamoto, &br;
Chapter 8 of "''Computer Simulation of Polymeric Materials: Applications of the OCTA System''", (Springer, 2016) ISBN:978-9811008146 
[http://dx.doi.org/10.1007/978-981-10-0815-3]
&br;&br;
+ K. Miyazaki, D.R. Reichman, and R. Yamamoto,
Supercooled Liquids under Shear: Theory and Simulation,
Phys. Rev. E, 70, 011501 (2004). 
"[[doi>:http://dx.doi.org/10.1103/PhysRevE.70.011501]]"
+ Kang Kim, Yasuya Nakayama, and Ryoichi Yamamoto, &br;
Chapters 8 and 9 of "''Electrical Phenomena at Interfaces and Biointerfaces: Fundamentals and Applications in Nano-, Bio-, and Environmental Sciences''" (Wiley, 2012) ISBN:978-0470582558
[http://dx.doi.org/10.1002/9781118135440.ch8]
[http://dx.doi.org/10.1002/9781118135440.ch9]
&br;&br;
+ R. Yamamoto,
Supercooled Liquids under Shear: Computational Approach,
Computer Simulation Studies in Condensed Matter Physics XVI; Ed. D.P. Landau, S.P Lewis, and H.B. Schuttler (Springer, Berlin, 2006) p.61-73. 
//"[[ISBN-13: 978-3540265641:http://www.amazon.com/Computer-Simulation-Studies-Condensed-Matter-Physics/dp/3540265643]]"
"[[doi>:http://dx.doi.org/10.1007/b137808]]"
+ Ryoichi Yamamoto, &br;
Section 5.25.6 of "''Powder Technology Handbook, 4th Edition''", (CRC Press, 2019) ISBN 9781138739222

*** Proceedings, etc. [#m47cfe1f]

+ Ryoichi Yamamoto, John J. Molina, and Rei Tatsumi,&br;
Simulating colloids and self-propelled particles with fully resolved hydrodynamics using the smoothed profile method (SPM),&br;
Proceedings for the "Workshop on Hybrid Particle-Continuum Methods in Computational Materials Physics"
(J&#252;lich, Germany, 4-7 March 2013) p.11-24.
"[[ISBN:978-3-89336-849-5:http://juser.fz-juelich.de/record/132949/files/NIC_Series_46.pdf]]"
&br;&br;
+ R. Yamamoto, Y. Nakayama, and K. Kim,
A Smooth Interface Method for Simulating Colloidal Dispersions,
J. Phys.; Condens. Matt., 16, S1945-S1955 (2004). 
"[[doi>:http://dx.doi.org/10.1088/0953-8984/16/19/007]]"
+ Shugo Yasuda and Ryoichi Yamamoto, &br;
Multiscale simulation for polymer melt flows in parallel plates, &br;
MMM2010 Conference Proceedings, 659--662 (2010).
&br;&br;
+ K. Miyazaki, R. Yamamoto, and D.R. Reichman,
Supercooled Liquids under Shear: A Mode-Coupling Approach,
AIP Conference Proceedings, 708, 635-638. (2004). 
"[[doi>:http://dx.doi.org/10.1063/1.1764242]]"
&br;&br;
+ R. Yamamoto, K. Miyazaki, and D.R. Reichman,
Supercooled Liquids under Shear: Computational Approach,
AIP Conference Proceedings, 708, 717-718 (2004). 
"[[doi>:http://dx.doi.org/10.1063/1.1764277]]"
&br;&br;
+ R. Yamamoto and A. Onuki,
Dynamics and Rheology of a supercooled polymer melt in shear flow,
J. Chem. Phys., 117 2359-2367 (2002). 
"[[doi>:http://dx.doi.org/10.1063/1.1488589]]"
&br;&br;
+ R. Yamamoto,
Simulating particle dispersions in nematic liquid-crystal solvents,
Phys. Rev. Lett., 87, 075502 (2001). 
"[[doi>:http://dx.doi.org/10.1103/PhysRevLett.87.075502]]"
&br;&br;
+ W. Kob, C. Brangian, T. Stuehn, and R. Yamamoto,
Equilibrating glassy systems with parallel tempering,
Computer Simulation Studies in Condensed Matter Physics XIII; Ed. D.P. Landau, S.P Lewis, and H.B. Schuttler (Springer, Berlin, 2001) p.153-166. 
"[[ISBN-13: 978-3540411901:http://www.amazon.com/Computer-Simulation-Studies-Condensed-Matter-Physics/dp/3540411909]]"
+ Yasuya Nakayama, Kang Kim and Ryoichi Yamamoto,&br;
Smoothed Profile Method for Direct Simulation of Flowing (Charged) Colloids in Solvents,&br;
AES Technical Reviews　Part A: International Journal of Nano and Advanced Engineering Materials 1, 21-28 (2008). 
//"[[doi>:http://dx.doi.org/]]"
[http://aix1.uottawa.ca/~yhaddad/AESTR_About.htm]
&br;&br;
+ R. Yamamoto and K. Kim,
Heterogeneity and finite size effects in the dynamics of supercooled liquids,
Journal de Physique IV, 10, 15-20 (2000). 
"[[doi>:http://dx.doi.org/10.1051/jp4:2000703]]"
+ Ryoichi Yamamoto, Yasuya Nakayama, and Kang Kim,&br;
A Smoothed Profile Method for Colloidal Dispersions,&br;
Advances in Science and Technology 43, 3rd International Conference "Computational Modeling and Simulation of Materials" Part B, Ed. P. Vincenzini and A. Lami (Techna Group Srl, Faenza - Italy, 2004) p.27-32. "[[ISBN:8886538464:http://www.reviewscout.com/8886538464]]"
&br;&br;
+ R. Yamamoto and A. Onuki,
Dynamics of Highly Supercooled Liquids far from Equilibrium,
J. Phys.; Cond. matt., 12, 6323-6334 (2000). 
"[[doi>:http://dx.doi.org/10.1088/0953-8984/12/29/304]]"
+ Yasuya Nakayama and Ryoichi Yamamoto,&br;
Resolving the Hydrodynamic Interaction in Particle Suspensions,&br;
Advances in Science and Technology 43, 3rd International Conference "Computational Modeling and Simulation of Materials" Part B, Ed. P. Vincenzini and A. Lami (Techna Group Srl, Faenza - Italy, 2004) p.77-84. "[[ISBN:8886538464:http://www.reviewscout.com/8886538464]]"
&br;&br;
+ R. Yamamoto and W. Kob,
Replica-exchange molecular dynamics simulation for supercooled liquids,
Phys. Rev. E, 61, 5473-5476 (2000). 
"[[doi>:http://dx.doi.org/10.1103/PhysRevE.61.5473]]"
+ Kang Kim and Ryoichi Yamamoto,&br;
Simulation Study of Charged Colloidal Particles in Electrolyte Solutions,&br;
Advances in Science and Technology 43, 3rd International Conference "Computational Modeling and Simulation of Materials" Part B, Ed. P. Vincenzini and A. Lami (Techna Group Srl, Faenza - Italy, 2004) p.33-40. "[[ISBN:8886538464:http://www.reviewscout.com/8886538464]]"
&br;&br;
+ R. Yamamoto and A. Onuki,
Dynamics and Rheology of a Supercooled Polymer Melt,
AIP Conference Proceedings, 519, 151-157 (2000). 
"[[doi>:http://dx.doi.org/10.1063/1.1291531]]"
+ Ryoichi Yamamoto and Akira Onuki,&br;
Dynamics of Highly Supercooled Liquids under Shear,&br;
Proceedings of the Complex Liquids Symposium, Ed. F. Yonezawa (World Scientific, Singapore, 1998) p.242-257 "[[ISBN:981023631X:http://www.reviewscout.com/981023631X]]"
&br;&br;
+ R. Yamamoto and A. Onuki,
Dynamics and Rheology of a Supercooled Polymer Melt,
Prog. Theor. Phys. Supplement, 138, 336-341 (2000). 
"[[doi>:http://dx.doi.org/10.1143/PTPS.138.336]]"
+ Akira Onuki and Ryoichi Yamamoto,&br;
Nonlinear Rheology of Highly Supercooled Liquids,&br;
Proceedings of the 2nd Tohwa University International Meeting "Statistical Physics" Ed. M.Tokuyama and I.Oppenheim (World Scientific, Singapore, 1998) p.26-29. "[[ISBN:9810233795:http://www.reviewscout.com/9810233795]]"
&br;&br;
+ R. Yamamoto and A. Onuki,
Large scale long-lived heterogeneity in the dynamics of supercooled liquids,
Int. J. Mod. Phys. C, 10, 1553-1561 (2000). 
"[[doi>:http://dx.doi.org/10.1142/S0129183199001339]]"
+ Yoshiyuki Tanaka, S. Matsuo, C. Takata, and Ryoichi Yamamoto,&br;
Thermal Conductivity of Environmentally Acceptable Alternatives to Fully Halogenated Chlorofluorocarbones,&br;
Proc. China-Japan Chem. Eng. Conf. (Tianjin, China, 1991) p.80-87.

*** Articles in Japanese [#lbc423f2]

- [[CiNiiで"山本 量一"を検索:https://cir.nii.ac.jp/all?q=%E5%B1%B1%E6%9C%AC+%E9%87%8F%E4%B8%80]]

----

+ 山本量一，&br;
第1章&#8194;粒子の性質と測定 1.10&#8194;単一粒子の運動と拡散 1.10.3&#8194;Brown運動,
粉体工学会誌 56, 272-277, (2019). [http://dx.doi.org/10.4164/sptj.56.272]
&br;&br;
+ K. Kim and R. Yamamoto,
Apparent finite-size effect in the dynamics of supercooled liquids,
Phys. Rev. E, 61, R41-R44 (2000). 
"[[doi>:http://dx.doi.org/10.1103/PhysRevE.61.R41]]"
+ 山本量一，&br;
アクティブマターのモデリング：水中を泳ぐ微生物／基板上で遊走・増殖する細胞,
分子シミュレーション研究会会誌"アンサンブル"，20, 173-178, (2018).
&br;&br;
+ H. Tanaka and R. Yamamoto, K. Koga, and X.C. Zeng,
Can thin disk-like ice clusters be more stable than compact droplet-like ice clusters?
Chem. Phys. Lett., 304, 378-384 (1999). 
"[[doi>:http://dx.doi.org/10.1016/S0009-2614(99)00293-6]]"
+ 山本量一，&br;
特集「アクティブマターの物理学」, 
分子シミュレーション研究会会誌"アンサンブル"，20, 148, (2018).
&br;&br;
+ R. Yamamoto and X.C. Zeng,
Molecular dynamics study of a phase-separating binary fluid mixture under shear flow,
Phys. Rev. E, 59, 3223-3230 (1999). 
"[[doi>:http://dx.doi.org/10.1103/PhysRevE.59.3223]]"
+ 山本量一 ，John J. MOLINA ，Simon K. SCHNYDER, &br;
細胞と組織に対する力学的モデルの構築, 
生物物理, 58 (3)，159-162 (2018). [http://dx.doi.org/10.2142/biophys.58.159]
&br;&br;
+ R. Yamamoto and A. Onuki,
Dynamics of Highly Supercooled Liquids,
AIP Conference Proceedings, 469, 476-483 (1999). 
"[[doi>:http://dx.doi.org/10.1063/1.58529]]"
+ 山本 量一, Molina John J., Schneider Simon K., &br;
基板上で遊走&#8226;増殖する細胞集団のモデリング,
Journal of Computer Chemistry, Japan, 17, 14-19 (2018). [https://doi.org/10.2477/jccj.2018-0003]
&br;&br;
+ R. Yamamoto and A. Onuki,
Heterogeneous Diffusion in Highly Supercooled Liquids,
Phys. Rev. Lett., 81, 4915-4018 (1998). 
"[[doi>:http://dx.doi.org/10.1103/PhysRevLett.81.4915]]"
+ 山本 量一, &br;
力学的モデルによる細胞の集団運動のシミュレーション,
生産研究, 69, 253-260 (2017). [http://dx.doi.org/10.11188/seisankenkyu.69.253]
&br;&br;
+ R. Yamamoto and A. Onuki,
Dynamics of Highly Supercooled Liquids; Heterogeneity, Rheology, and Diffusion,
Phys. Rev. E, 58, 3515-3529 (1998). 
"[[doi>:http://dx.doi.org/10.1103/PhysRevE.58.3515]]"
+ 山本量一，大山倫弘，John J. MOLINA，Simon K. SCHNYDER，&br;
ソフトマターのモデリング：非平衡系・生物系への挑戦,
"化学工学"（会誌），Vol.81, 282-285 (2017). [[PDF:http://www.scej.org/docs/publication/journal/backnumber/8106-open-article.pdf]]
&br;&br;
+ A. Onuki and R. Yamamoto,
Kinetic Heterogeneities and Nonlinear Rheology of Highly Supercooled Liquids,
J. Non-cryst. Solid., 235-237, 34-40 (1998). 
"[[doi>:http://dx.doi.org/10.1016/S0022-3093(98)00558-4]]"
+ 安田修悟, 山本量一，&br;
Synchronized Molecular Dynamics 法による高分子潤滑の解析, 
分子シミュレーション研究会会誌"アンサンブル"，17, 30-34, (2015).
&br;&br;
+ R. Yamamoto and A. Onuki,
Nonlinear Rheology of a Highly Supercooled Liquid,
Europhys. Lett., 40, 61-66 (1997). 
"[[doi>:http://dx.doi.org/10.1209/epl/i1997-00419-1]]"
+ 安田修悟, 村島隆浩, 谷口貴志, 山本量一, &br;
ソフトマターのマルチスケールシミュレーション, 
日本シミュレーション学会誌, 31, 23-27, (2012).
&br;&br;
+ R. Yamamoto and A. Onuki,
Kinetic Heterogeneities in a Highly Supercooled Liquid,
J. Phys. Soc. Jpn., 66, 2545-2548 (1997). 
"[[doi>:http://dx.doi.org/10.1143/JPSJ.66.2545]]"
+ 谷口貴志, 山本量一, &br;
"解説：ソフトマターのマルチスケールシミュレーション", 
日本物理學會誌, 67, 317-324, (2012).
&br;&br;
+ R. Yamamoto, M. Kano, and Y. Kawamoto,
Computer simulation of ionic conduction in ZrF_4-BaF_2 glass, II. Normal mode analysis,
J. Phys.: Cond. Matt., 9, 5157-5166 (1997). 
"[[doi>:http://dx.doi.org/10.1088/0953-8984/9/24/014]]"
+ 山本量一, &br;
ソフトマターの多階層/相互接続シミュレーション,
「マルチスケール・マルチフィジックス現象の統合シミュレーション」
科学技術振興機構 (ISBN 978-4-9904860-3-7 C0040)
&br;&br;
+ A. Onuki, R. Yamamoto, and T. Taniguchi,
Viscoelastic effects and shear-induced phase separation in polymer solutions in polymer solutions,
Progr. Colloid. Polym. Sci., 106, 150-157 (1997). 
"[[doi>:http://dx.doi.org/10.1007/BFb0111049]]"
+ 村島隆浩, 安田修悟, 谷口貴志, 山本量一, &br;
"ソフトマターの多階層・相互接続シミュレーション―高分子メルト
のマルチスケールモデル―", 
工業材料, 60, 27-30, (2012).
&br;&br;
+ A. Onuki, R. Yamamoto, and T. Taniguchi,
Phase separation in polymer solutions induced by shear,
J. Phys. II France, 7, 295-304 (1997). 
"[[doi>:http://dx.doi.org/10.1051/jp2:1997126]]"
+ 安田修悟, 山本量一, &br;
振動境界層流れにおける高分子液体の動的レオロジー特性, 
分子シミュレーション研究会会誌"アンサンブル", 13, 105 (2011).
&br;&br;
+ S. Matsuo, Y. Mizuguchi, Y. Tanaka, H. Kubota, and R. Yamamoto,
Volumetric properties of mixtures of 1,4-dioxane and water at high pressures,
Int. J. Thermophys., 17, 441-454 (1996). 
"[[doi>:http://dx.doi.org/10.1007/BF01443402]]"
&br;&br;
+ R. Yamamoto and K. Nakanishi,
Computer simulation of vapor-liquid phase separation,
Molec. Simulation, 16, 119-126 (1996). 
"[[doi>:http://dx.doi.org/10.1080/08927029608024066]]"
&br;&br;
+ R. Yamamoto, T. Kobayashi, and Y. Kawamoto,
Computer simulation of ionic conduction in ZrF_4-BaF_2 glass,
J. Phys.: Cond. Matt., 7, 8557-8567 (1995). 
"[[doi>:http://dx.doi.org/10.1088/0953-8984/7/45/011]]"
&br;&br;
+ M. Takahashi, R. Yamamoto, R. Kanno, and Y. Kawamoto,
Molecular dynamics simulation of Er^{3+}-doped chlorofluorozirconate glasses,
J. Phys.; Cond. Matt., 7, 4583-4592 (1995). 
"[[doi>:http://dx.doi.org/10.1088/0953-8984/7/24/001]]"
&br;&br;
+ R. Yamamoto, O. Kitao, and K. Nakanishi,
Can the van der Waals loop vanish?, Effect of domain size,
Molec. Phys., 84, 757-768 (1995). 
"[[doi>:http://dx.doi.org/10.1080/00268979500100521]]"
&br;&br;
+ R. Yamamoto, O. Kitao, and K. Nakanishi,
Monte Carlo Simulation of Fluoro Propane,
Fluid Phase Equilibria, 104, 349-361 (1995). 
"[[doi>:http://dx.doi.org/10.1016/0378-3812(94)02660-S]]"
&br;&br;
+ R. Yamamoto and K. Nakanishi,
Computer simulation of vapor-liquid phase separation in two- and three-dimensional fluids. II. Domain structure,
Phys. Rev. B, 51, 2715-2722 (1995). 
"[[doi>:http://dx.doi.org/10.1103/PhysRevB.51.2715]]"
&br;&br;
+ R. Yamamoto, H. Tanaka, K. Nakanishi, and X.C. Zeng,
Can the van der Waals loop vanish?, Effect of surface free energy,
Chem. Phys. Lett., 231, 401-406 (1994). 
"[[doi>:http://dx.doi.org/10.1016/0009-2614(94)01268-7]]"
&br;&br;
+ R. Yamamoto and K. Nakanishi,
Computer simulation of vapor-liquid phase separation in two- and three-dimensional fluids,
Growth law of domain size, 
Phys. Rev. B, 49, 14958-14966 (1994). 
"[[doi>:http://dx.doi.org/10.1103/PhysRevB.49.14958]]"
&br;&br;
+ R. Yamamoto, O. Kitao, and K. Nakanishi,
Intermolecular Interaction of Fluoro Propanes,
Molec. Simulation, 12, 383-391 (1994). 
"[[doi>:http://dx.doi.org/10.1080/08927029408023045]]"
&br;&br;
+ S. Matsuo, R. Yamamoto, H. Kubota, and Y. Tanaka,
Volumetric Properties of Mixtures of Fluoroalcohols and Water at High Pressures,
Int. J. Thermophys., 15, 245-259 (1994). 
"[[doi>:http://dx.doi.org/10.1007/BF01441585]]"
&br;&br;
+ S. Matsuo, R. Yamamoto, Y. Tanaka, and H. Kubota,
Viscosity of Mixtures of Fluoroalcohols and Water at High Pressures,
Int. J. Thermophys., 14, 835-849 (1993).
"[[doi>:http://dx.doi.org/10.1007/BF00502111]]"
&br;&br;
+ R. Yamamoto, S. Matsuo, and Y. Tanaka,
Thermal Conductivity of Halogenated Ethanes, HFC-134a, HCFC-123 and HCFC-141b,
Int. J. Thermophys., 14, 79-90 (1993). 
"[[doi>:http://dx.doi.org/10.1007/BF00522663]]"


*** Proceedings, etc. [#m47cfe1f]

+ R. Yamamoto, Y. Nakayama, and K. Kim,
A Smoothed Profile Method for Colloidal Dispersions,
Advances in Science and Technology 43, 3rd International Conference "Computational Modeling and Simulation of Materials" Part B, Ed. P. Vincenzini and A. Lami (Techna Group Srl, Faenza - Italy, 2004) p.27-32.
&br;&br;
+ Y. Nakayama and R. Yamamoto,
Resolving the Hydrodynamic Interaction in Particle Suspensions,
Advances in Science and Technology 43, 3rd International Conference "Computational Modeling and Simulation of Materials" Part B, Ed. P. Vincenzini and A. Lami (Techna Group Srl, Faenza - Italy, 2004) p.77-84.
&br;&br;
+ K. Kim and R. Yamamoto,
Simulation Study of Charged Colloidal Particles in Electrolyte Solutions,
Advances in Science and Technology 43, 3rd International Conference "Computational Modeling and Simulation of Materials" Part B, Ed. P. Vincenzini and A. Lami (Techna Group Srl, Faenza - Italy, 2004) p.33-40.
&br;&br;
+ R. Yamamoto and A. Onuki,
Dynamics of Highly Supercooled Liquids under Shear,
Proceedings of the Complex Liquids Symposium, Ed. F. Yonezawa (World Scientific, Singapore, 1998) p.242-257.
&br;&br;
+ A. Onuki and R. Yamamoto,
Nonlinear Rheology of Highly Supercooled Liquids,
Proceedings of the 2nd Tohwa University International Meeting "Statistical Physics" Ed. M.Tokuyama and I.Oppenheim (World Scientific, Singapore, 1998) p.26-29.
&br;&br;
+ Y. Tanaka, S. Matsuo, C. Takata, and R. Yamamoto,
Thermal Conductivity of Environmentally Acceptable Alternatives to Fully Halogenated Chlorofluorocarbones,
Proc. China-Japan Chem. Eng. Conf., Tianjin, China (1991) p.80-87.

*** Articles in Japanese [#lbc423f2]

- [[CiNiiで"山本量一"を検索:http://ci.nii.ac.jp/search?q=%22%E5%B1%B1%E6%9C%AC%E9%87%8F%E4%B8%80%22&range=0&count=100&sortorder=1]]

----

+ 安田修悟，山本量一， 
+ 安田修悟，山本量一，&br;
ソフトマターのマルチスケールシミュレーション：高分子溶液の流動解析への応用，
プラズマ・核融合学会誌 85 (2009) (in print).
プラズマ・核融合学会誌 85, 607-610 (2009).
"[[CiNii:http://ci.nii.ac.jp/naid/110007360673]]"
&br;&br;
+ 名嘉山祥也, 金鋼, 岩下拓哉, 山本量一, 
+ 名嘉山祥也, 金鋼, 岩下拓哉, 山本量一, &br;
コロイド分散系の直接数値シミュレーション, 
九州大学応用力学研究所研究集会報告「乱流現象及び多自由度系の動力学、構造と統計法則」19ME-S7. (2008).
&br;&br;
+ 山本量一, 
+ 山本量一, &br;
荷電コロイド分散系の計算機シミュレーション,
セラミックス, 43, 77-86 (2008).
"[[CiNii:http://ci.nii.ac.jp/naid/10021138295]]"
&br;&br;
+ 山本量一, 
+ 山本量一, &br;
コロイド分散系のハイブリッドシミュレーション,
高分子, 56, 1001 (2007).
"[[CiNii:http://ci.nii.ac.jp/naid/10019981288]]"
&br;&br;
+ 岩下拓哉, 名嘉山祥也, 山本量一, 
ニュートン流体中に分散したブラウン粒子に対する付加質量の影響,
計算力学講演会講演論文集, 20, 103-104 (2007).
"[[CiNii:http://ci.nii.ac.jp/naid/110007084671]]"
&br;&br;
+ 山本量一, コロイド分散系の直接数値計算法とその応用,
計算力学講演会講演論文集, 20, 195-196 (2007).
"[[CiNii:http://ci.nii.ac.jp/naid/110007084583]]"
&br;&br;
+ 山本量一, 過冷却液体のダイナミクス: 計算機シミュレーションによる動的不均一性の解析,
物性研究, 88, 756-758 (2007).
"[[CiNii:http://ci.nii.ac.jp/naid/110006381149]]"
&br;&br;
+ 山本量一, 米谷慎, 奥薗透, 福田順一, 
+ 山本量一, 米谷慎, 奥薗透, 福田順一, &br;
液晶の計算機シミュレーション,
液晶, 11, 259-266 (2007).
"[[CiNii:http://ci.nii.ac.jp/naid/10019554009]]"
&br;&br;
+ 名嘉山祥也, 金鋼, 山本量一, 
+ 名嘉山祥也, 金鋼, 山本量一, &br;
コロイド分散系の直接数値シミュレーション,
ケミカルエンジニヤリング, 52, 340-345 (2007).
"[[CiNii:http://ci.nii.ac.jp/naid/40015457128]]"
&br;&br;
+ 名嘉山祥也, 金鋼, 山本量一, 
+ 名嘉山祥也, 金鋼, 山本量一, &br;
Smoothed Profile 法によるコロイド系の直接数値シミュレーション,
粉体工学会誌, 44, 191-197 (2007).
"[[CiNii:http://ci.nii.ac.jp/naid/10018893424]]"
&br;&br;
+ 金鋼, 名嘉山祥也, 山本量一, 
+ 金鋼, 名嘉山祥也, 山本量一, &br;
荷電コロイド分散系の直接数値シミュレーション -KAPSELの原理と操作-,
粉体工学会誌, 44, 28-36 (2007).
"[[CiNii:http://ci.nii.ac.jp/naid/10018721140]]"
&br;&br;
+ 金鋼, 名嘉山祥也, 山本量一,
Smoothed Profile 法による荷電コロイド粒子の電気泳動シミュレーション,
数理解析研究所講究録, 1496, 122-123 (2006). 
"[[CiNii:http://ci.nii.ac.jp/naid/110004669776]]"
&br;&br;
+ 山本量一, 小貫明, 
ガラスの非平衡ダイナミクス,
日本物理学会誌, 60, 603-609 (2005). 
+ 山本量一, 小貫明, &br;
ガラスの非平衡ダイナミクス，
日本物理學會誌, 60, 603-609 (2005). 
"[[CiNii:http://ci.nii.ac.jp/naid/110002078859]]"
&br;&br;
+ 山本量一, 名嘉山祥也, 金鋼,
Smoothed Profile法によるコロイド分散系のシミュレーション,
物性研究, 83, 327-328 (2004).
"[[CiNii:http://ci.nii.ac.jp/naid/110006409895]]"
&br;&br;
+ 山本量一,
シア流下における過冷却液体の相関関数,
物性研究, 81, 180-181 (2003).
"[[CiNii:http://ci.nii.ac.jp/naid/110006409160]]"
&br;&br;
+ R. Yamamoto and A. Onuki,
Dynamics and Rheology of Supercooled Liquids,
物性研究, 79, 297-298 (2002).
"[[CiNii:http://ci.nii.ac.jp/naid/110006408700]]"
&br;&br;
+ 山本量一, 小貫明, 
+ 山本量一, 小貫明, &br;
ガラス・過冷却液体における動的不均一性,
高圧力学会誌, 9, 134-141 (1999).
"[[CiNii:http://ci.nii.ac.jp/naid/10002845945]]"
&br;&br;
+ 山本量一, 中西浩一郎, 
+ 山本量一, 中西浩一郎, &br;
1994年の化学：シミュレーションによるフラーレン生成過程の解明,
化学, 49, 66-67 (1994).
"[[CiNii:http://ci.nii.ac.jp/naid/40000392343]]"
&br;&br;
+ 松尾成信, 田中嘉之, 田谷智, 山本量一,
+ 松尾成信, 田中嘉之, 田谷智, 山本量一,&br;
混合気体の熱伝導率 －（HFC 32 + HFC125）系－,
熱物性, 8, 207-212 (1994).
&br;&br;
+ 山本量一, 北尾修, 中西浩一郎, 
+ 山本量一, 北尾修, 中西浩一郎, &br;
プロパン系フロン代替物質の分子シミュレーション,
JCPE Newsletter, 4, 4-15 (1993).

*** Books in Japanese [#wfff2705]
+ 山本量一，John J. Molina，&br;
第６章, 
「増補版　高分子材料シミュレーション -OCTA活用事例集」公益社団法人新化学技術推進協会 (編)，ISBN:978-4873266879（化学工業日報社, 2017）
&br;&br;
+ 山本量一，John J. Molina，&br;
第６章, 
「高分子材料シミュレーション -OCTA活用事例集」公益社団法人新化学技術推進協会 (編)，ISBN:978-4873266381（化学工業日報社, 2014）
&br;&br;
+ 金鋼, 名嘉山祥也, 山本量一, &br;
2.23.3.3, 2.23.3.4, 
「粉体工学ハンドブック」粉体工学会（編）, ISBN:978-4-254-25267-5（朝倉書店, 2014)
&br;&br;
+ 「マルチスケール・マルチフィジックス現象の統合シミュレーション」山本量一（編）ISBN:978-4-9904860-3-7 C0040 (科学技術振興機構, 2012)
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